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strvalidator (version 1.5.0)

Process Control and Internal Validation of Forensic STR Kits

Description

An open source platform for validation and process control. Tools to analyse data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

246

Version

1.5.0

License

GPL-2

Maintainer

Oskar Hansson

Last Published

June 9th, 2015

Functions in strvalidator (1.5.0)

addDye_gui

Add Dye Information
calculateAT6

Calculate Analytical Threshold
calculateAT_gui

Calculate Analytical Threshold
calculateBalance_gui

Calculate Balance
calculateResultType

Calculate Result Type
calculateStutter_gui

Calculate Stutter
columns_gui

Column Actions
editData_gui

Edit or View Data Frames
calculateHeterozygous_gui

Calculate Heterozygous Loci
plotBalance_gui

Plot Balance
plotPeaks_gui

Plot Peaks
ref2

SGMPlus example data
tableCapillary

Table Capillary
strValidator-package

Simplifies internal validation of forensic STR typing kits
calculateAT

Calculate Analytical Threshold
getDb

Get Allele Frequency Database
filterProfile

Filter Profile
guessProfile_gui

Guess Profile
columns

Column Actions
plotPrecision_gui

Plot Precision
listObjects

List Objects
set1

Typing data in 'GeneMapper' format
tableBalance_gui

Table Balance
tableCapillary_gui

Table Capillary
trim_gui

Trim Data
tableStutter_gui

Table Stutter
addSize

Add Size Information.
calculateCapillary_gui

Calculate Capillary Balance
calculateDropout_gui

Calculate Dropout Events
checkDataset

Check Dataset
export

Export
calculateStutter

Calculate Stutter
checkSubset_gui

Check Subset
getKit

Get Kit
makeKit_gui

Make Kit
plotDistribution_gui

Plot Distribution
plotPullup_gui

Plot Pull-up
ref3

ESX17 example data for dropout analysis.
calculateCapillary

Calculate Capillary Balance
calculateDropout

Calculate Drop-out Events
calculateHeight

Calculate Peak Height.
filterProfile_gui

Filter Profile
calculatePeaks

Calculate Peaks
calculateOverlap

Calculate Bins Overlap
ref1

ESX17 Positive Control Profile
ref51

ESX17 example data for mixture analysis.
readBinsFile

Read Bins file
cropData_gui

Crop Or Replace
trim

Trim Data
generateEPG

Generate EPG
modelDropout_gui

Model And Plot Drop-out Events
plotDropout_gui

Plot Drop-out Events
saveObject

Save Object
slim

Slim Data Frames
tablePrecision

Calculate Precision
ref4

ESX17 example data for dropout analysis.
addColor

Add Color Information.
calculatePullup

Calculate Spectral Pull-up
addMarker_gui

Add Missing Markers
calculateAT6_gui

Calculate Analytical Threshold
export_gui

Export
ref52

ESX17 example data for mixture analysis.
blockAT

Block And Prepare Data To Analyze Analytical Threshold
calculateHeterozygous

Calculate Heterozygous Loci
calculatePullup_gui

Calculate Spectral Pull-up
colNames

Column Names
set4

ESX17 example data for dropout analysis.
tableBalance

Table Balance
strvalidator

Graphical User Interface For The STR-validator Package
calculateConcordance_gui

Calculate Concordance
addData

Adds New Data Columns to a Data Frame
compact

Compact Profile
detectKit

Detect Kit
guessProfile

Guess Profile
plotStutter_gui

Plot Stutter
plotAT_gui

Plot Analytical Threshold
slim_gui

Slim Data Frames
tableStutter

Table Stutter
calculateConcordance

Calculate Concordance.
calculateOL_gui

Analyse Off-ladder Alleles
calculateMixture_gui

Calculate Mixture
combineBinsAndPanels

Combine Bins And Panels Files.
import_gui

Import Data
import

Import Data.
plotKit_gui

Plot Kit Marker Ranges
plotResultType_gui

Plot Result Type
ref11

ESX17 Positive Control Profile
set2

SGMPlus example data
addSize_gui

Add Size Information
addData_gui

Add Data
calculateBalance

Calculate Balance
calculateOverlap_gui

Calculate Bins Overlap
calculateHeight_gui

Calculate Peak Height
calculatePeaks_gui

Calculate Peaks
checkSubset

Check Subset
generateEPG_gui

Generate EPG
plotCapillary_gui

Plot Capillary Balance
sortMarker

Sort Markers
combine_gui

Combine Datasets
addMarker

Add Missing Markers.
set3

ESX17 example data for dropout analysis.
calculateOL

Analyse Off-ladder Alleles
readPanelsFile

Read Panels File
tablePrecision_gui

Table Precision
calculateMixture

Calculate Mixture.
ggsave_gui

Save Image
heightToPeak

Height To Peak.
calculateResultType_gui

Calculate Result Type
set5

ESX17 example data for mixture analysis.