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strvalidator (version 1.6.0)

Process Control and Internal Validation of Forensic STR Kits

Description

An open source platform for validation and process control. Tools to analyse data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

274

Version

1.6.0

License

GPL-2

Maintainer

Oskar Hansson

Last Published

January 18th, 2016

Functions in strvalidator (1.6.0)

addData

Adds New Data Columns to a Data Frame
calculateAT

Calculate Analytical Threshold
calculateDropout

Calculate Drop-out Events
calculateLb

Calculate Inter-locus Balance
calculatePullup

Calculate Spectral Pull-up
editData_gui

Edit or View Data Frames
generateEPG

Generate EPG
combineBinsAndPanels

Combine Bins And Panels Files.
checkSubset_gui

Check Subset
listObjects

List Objects
calculateCapillary

Calculate Capillary Balance
calculateCapillary_gui

Calculate Capillary Balance
calculatePullup_gui

Calculate Spectral Pull-up
calculateAT_gui

Calculate Analytical Threshold
calculateHeterozygous_gui

Calculate Heterozygous Loci
checkDataset

Check Dataset
calculateResultType_gui

Calculate Result Type
calculateOL

Analyse Off-ladder Alleles
import_gui

Import Data
plotAT_gui

Plot Analytical Threshold
plotRatio_gui

Plot Ratio
plotKit_gui

Plot Kit Marker Ranges
calculateMixture_gui

Calculate Mixture
trim_gui

Trim Data
calculateBalance_gui

Calculate Balance
ref52

ESX17 example data for mixture analysis.
checkSubset

Check Subset
calculateSpike

Detect Spike
slim_gui

Slim Data Frames
plotBalance_gui

Plot Balance
tableBalance_gui

Table Balance
calculateOL_gui

Analyse Off-ladder Alleles
tableCapillary_gui

Table Capillary
trim

Trim Data
addSize

Add Size Information.
addColor

Add Color Information.
calculateOverlap_gui

Calculate Bins Overlap
combine_gui

Combine Datasets
export

Export
scrambleAlleles

Scramble Alleles
tableCapillary

Table Capillary
plotDropout_gui

Plot Drop-out Events
addData_gui

Add Data
calculateBalance

Calculate Balance
addSize_gui

Add Size Information
calculateResultType

Calculate Result Type
calculateRatio

Calculate Ratio
columns

Column Actions
export_gui

Export
plotPeaks_gui

Plot Peaks
tableStutter_gui

Table Stutter
import

Import Data
tableBalance

Table Balance
tablePrecision

Calculate Precision
slim

Slim Data Frames
addDye_gui

Add Dye Information
calculateConcordance

Calculate Concordance.
calculateHeterozygous

Calculate Heterozygous Loci
columns_gui

Column Actions
getDb

Get Allele Frequency Database
generateEPG_gui

Generate EPG
ref2

SGMPlus example data
guessProfile

Guess Profile
calculatePeaks_gui

Calculate Peaks
strvalidator-package

Process Control and Internal Validation of Forensic STR Kits
set1

Typing data in 'GeneMapper' format
plotCapillary_gui

Plot Capillary Balance
strvalidator

Graphical User Interface For The STR-validator Package
calculatePeaks

Calculate Peaks
addMarker_gui

Add Missing Markers
calculateAT6

Calculate Analytical Threshold
colNames

Column Names
ref1

ESX17 Positive Control Profile
modelDropout_gui

Model And Plot Drop-out Events
detectKit

Detect Kit
set5

ESX17 example data for mixture analysis.
set2

SGMPlus example data
calculateLb_gui

Calculate Locus Balance
calculateMixture

Calculate Mixture.
filterProfile_gui

Filter Profile
readBinsFile

Read Bins file
set4

ESX17 example data for dropout analysis.
calculateAllele

Calculate Allele
blockAT

Block And Prepare Data To Analyze Analytical Threshold
calculateAT6_gui

Calculate Analytical Threshold
calculateConcordance_gui

Calculate Concordance
calculateOverlap

Calculate Bins Overlap
calculateStutter

Calculate Stutter
colConvert

Convert Columns
guessProfile_gui

Guess Profile
heightToPeak

Height To Peak.
plotPrecision_gui

Plot Precision
calculateHeight

Calculate Peak Height.
addMarker

Add Missing Markers.
calculateSpike_gui

Detect Spike
plotResultType_gui

Plot Result Type
cropData_gui

Crop Or Replace
getKit

Get Kit
ref4

ESX17 example data for dropout analysis.
calculateDropout_gui

Calculate Dropout Events
ref51

ESX17 example data for mixture analysis.
ref11

ESX17 Positive Control Profile
tableStutter

Table Stutter
set3

ESX17 example data for dropout analysis.
ref3

ESX17 example data for dropout analysis.
plotPullup_gui

Plot Pull-up
plotStutter_gui

Plot Stutter
readPanelsFile

Read Panels File
calculateHeight_gui

Calculate Peak Height
filterProfile

Filter Profile
makeKit_gui

Make Kit
plotDistribution_gui

Plot Distribution
sortMarker

Sort Markers
calculateRatio_gui

Calculate Ratio
tablePrecision_gui

Table Precision
ggsave_gui

Save Image
calculateStutter_gui

Calculate Stutter
saveObject

Save Object