Usage
generateEPG(data, kit, title = NULL, wrap = TRUE, boxplot = FALSE, peaks = TRUE, collapse = TRUE, silent = FALSE, ignore.case = TRUE, at = 0, scale = "free", limit.x = TRUE, label.size = 3, label.angle = 0, label.vjust = 1, label.hjust = 0.5, expand = 0.1, debug = FALSE)
Arguments
data
data frame containing at least columns 'Sample.Name', 'Allele', and 'Marker'.
kit
string or integer representing the STR typing kit.
title
string providing the title for the EPG.
wrap
logical TRUE to wrap by dye.
boxplot
logical TRUE to plot distributions of peak heights as boxplots.
peaks
logical TRUE to plot peaks for distributions using mean peak height.
collapse
logical TRUE to add the peak heights of identical alleles peaks within each marker.
NB! Removes off-ladder alleles.
silent
logical FALSE to show plot.
ignore.case
logical FALSE for case sensitive marker names.
at
numeric analytical threshold (Height
scale
character "free" free x and y scale, alternatively "free_y" or "free_x".
limit.x
logical TRUE to fix x-axis to size range.
To get a common x scale set scale="free_y" and limit.x=TRUE.
label.size
numeric for allele label text size.
label.angle
numeric for allele label print angle.
label.vjust
numeric for vertical justification of allele labels.
label.hjust
numeric for horizontal justification of allele labels.
expand
numeric for plot are expansion (to avoid clipping of labels).
debug
logical for printing debug information to the console.