dpoislnorm

Density of the poisson-lognormal compound distribution

Estimate and understand individual-level variation in
transmission. Implements density and cumulative compound Poisson
discrete distribution functions ('Kremer et al.' (2021)
<doi:10.1038/s41598-021-93578-x>), as well as functions to calculate
infectious disease outbreak statistics given epidemiological
parameters on individual-level transmission; including the probability
of an outbreak becoming an epidemic/extinct ('Kucharski et al.' (2020)
<doi:10.1016/S1473-3099(20)30144-4>), or the cluster size
statistics, e.g. what proportion of cases cause X\% of transmission
('Lloyd-Smith et al.' (2005) <doi:10.1038/nature04153>).

Joshua W. Lambert

superspreading

Understand Individual-Level Variation in Infectious Disease
Transmission

Adam Kucharski

Dillon C. Adam

Sebastian Funk

Pratik Gupte

Hugo Gruson

James M. Azam

Chris Hartgerink

dpoislnorm function

<dl><dt>x</dt>
<dd>A <code>number</code> for the quantile of the distribution.</dd>
<dt>meanlog</dt>
<dd>A <code>number</code> for the mean of the distribution on the log scale.</dd>
<dt>sdlog</dt>
<dd>A <code>number</code> for the standard deviation of the distribution on
the log scale.</dd></dl>

Arguments

Density of the poisson-lognormal compound distribution — dpoislnorm

<dl>

<dt>x</dt>
<dd>A <code>number</code> for the quantile of the distribution.</dd>


<dt>meanlog</dt>
<dd>A <code>number</code> for the mean of the distribution on the log scale.</dd>


<dt>sdlog</dt>
<dd>A <code>number</code> for the standard deviation of the distribution on
the log scale.</dd>

</dl>

dpoislnorm: Density of the poisson-lognormal compound distribution

Description

Usage

Value

Arguments

Details

Examples