visKernels

logical to indicate whether to open a new
page. By default, it sets to true for opening a new page

newpage


<code>visKernels</code> is supposed to visualize a series of
neighborhood kernels, each of which is a non-increasing
functions of: i) the distance $d_{wi}$ between the
hexagon/rectangle $i$ and the winner $w$, and ii)
the radius $\delta_t$ at time $t$.


A supra-hexagonal map is a giant hexagon on a 2-dimensional grid seamlessly consisting of smaller hexagons. It is supposed to train, analyse and visualise a high-dimensional omics input data. The supraHex is able to carry out gene clustering/meta-clustering and sample correlation, plus intuitive visualisations to facilitate exploratory analysis. More importantly, it allows for overlaying additional data onto the trained map to explore relations between input and additional data. So with supraHex, it is also possible to carry out multilayer omics data comparisons. Newly added utilities are advanced heatmap visualisation and tree-based analysis of sample relationships. Uniquely to this package, users can ultrafastly understand any tabular omics data, both scientifically and artistically, especially in a sample-specific fashion but without loss of information on large genes (see http://www.ncbi.nlm.nih.gov/pubmed/24309102).

visKernels: Function to visualize neighborhood kernels

Description

Usage

Arguments

Value

See Also

Examples