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survClip (version 0.2.3)
Survival Analysis for Pathways
Description
Survival analysis using pathway topology. Data reduction techniques with graphical models are used to identify pathways or modules that are associated to survival.
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Version
Version
0.2.3
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Install
install.packages('survClip')
Monthly Downloads
10
Version
0.2.3
License
AGPL-3
Maintainer
Paolo Martini
Last Published
November 22nd, 2017
Functions in survClip (0.2.3)
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pathwaySurvivalTest
Survival analysis on the whole pathway
computePCs
For internal usage only. Compute principal components according to the chosen method.
survAnnot
Annotations.
cliqueSurvivalTest
Perform survival test on all the cliques of the graph.
computeDays
Function to compute days.
getTopLoadGenes
Extract the relevant genes associated with survival
exp
Expression dataset.
survCliques-class
Class
"survCliques"
survPath-class
Class
"survPath"
graph
Expression dataset.