survClip (version 0.2.3)

Survival Analysis for Pathways

Description

Survival analysis using pathway topology. Data reduction techniques with graphical models are used to identify pathways or modules that are associated to survival.

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Version

Install

install.packages('survClip')

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Version

0.2.3

License

AGPL-3

Maintainer

Paolo Martini

Last Published

November 22nd, 2017

Functions in survClip (0.2.3)

pathwaySurvivalTest

Survival analysis on the whole pathway

computePCs

For internal usage only. Compute principal components according to the chosen method.

survAnnot

Annotations.

cliqueSurvivalTest

Perform survival test on all the cliques of the graph.

computeDays

Function to compute days.

getTopLoadGenes

Extract the relevant genes associated with survival

exp

Expression dataset.

survCliques-class

Class "survCliques"