int.eprior:
Integration function to find nonparametric adjustments
Description
Monte Carlo integration function to find the nonparametric adjustments
Usage
int.eprior(sdat, g.hat, d.hat)
Arguments
sdat
Matrix of standardized gene expression data.
g.hat
Estimated additive batch effect.
d.hat
Estimated multiplicative batch effect.
Value
Matrix with two columns containing the estimated additive and multiplicative batch effects.
Warning
This function is not called by the user directly.References
W. Johnson E., L. Chen, Rabinovic, and A. Adjusting batch effects in microarray
expression data using Empirical Bayes methods. Biostatistics, 8(1):118-127, January2007. ISSN 1465-4644. doi: http://dx.doi.org/10.1093/biostatistics/kxj037.