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survMisc (version 0.4.2)

Miscellaneous functions for survival data.

Description

A collection of functions for analysis of survival data. These extend the methods available in package survival.

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Version

Install

install.packages('survMisc')

Monthly Downloads

27,786

Version

0.4.2

License

GPL-2

Maintainer

Chris Dardis

Last Published

May 13th, 2014

Functions in survMisc (0.4.2)

mean.Surv

Mean for Surv object

cutp

Cutpoint for a continuous variable in a coxph or survfit model

tneBMT

Time, no. at risk, no. events for BMT data

autoplot.rpart

Plot a recursive partitioning tree using ggplot2

profLik

Profile likelihood for coefficients in Coxph model

autoplot.tableAndPlot

Arrange and plot a survival plot, it's legend and a table.

survEst

Estimates of survival functions based on n and e

plot.Surv

Plot Survival object

tne

Time, No. at risk, No. events

lrSS

Sample size required to show difference in survival by log-rank test given prior information about Kaplan-Meier estimate

gamTerms

Individual terms of a Generalized Additive or Cox Proportional Hazard Model

quantile

Quantiles and median for Surv and survfit objects

covMatSurv

Covariance matrix for survival data

multi

Multiple coxph models

tableRhs

Table the outcome against all predictors in a formula

btumors

brain tumors trial data

survMisc-package

Miscellaneous functions for survival analysis.

calcSurv

Calculate estimators of survival & hazard functions with variance for a Surv object describing right censored data

whas100

Worcester Heart Attack Study WHAS100 Data

dxPlot

Diagnostic plots for coxph model

comp

Compare survival curves

Information criterion

autoplot.survfit

Generate a ggplot for survfit object

plotMultiCoxph

Plot multi.coxph object

gastric

gastric cancer trial data

tneKidney

Time, no. at risk, no. events for kidney

sig

Significiance tests of coefficients in a Coxph model

genSurv

Generate survival data

local

Local tests for a model

air

Air data

whas500

Worcester Heart Attack Study WHAS500 Data

Information criterion

plotTerm

Plot individual terms of a Generalized Additive gam or Cox Proportional Hazards coxph Model

Diagnostics for coxph models

gof

Goodness of fit test for coxph models

mpip

Multi-center Post-Infarction Project

Dataset.

genDfSurv

Generate data frame for survival analysis

Confidence intervals for survival curves

as.Surv

Convert time and status to a right-censored survival object, ordered by time

rsq

r^2 measures for a a coxph or survfit model

plot.MultiCoxph

Plot a multi.coxph object

Estimates of survival (or hazard) function based on $n$ and $e$

autoplot

Generate a ggplot for survfit object