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survMisc (version 0.4.4)

Miscellaneous Functions for Survival Data

Description

A collection of functions for analysis of survival data. These extend the methods available in the survival package.

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Version

Install

install.packages('survMisc')

Monthly Downloads

27,786

Version

0.4.4

License

GPL-2

Maintainer

Chris Dardis

Last Published

January 6th, 2015

Functions in survMisc (0.4.4)

profLik

Profile likelihood for coefficients in Coxph model

autoplot.tableAndPlot

Arrange and plot a survival plot, it's legend and a table.

btumors

Brain tumors trial data

covMatSurv

Covariance matrix for survival data

rsq

r^2 measures for a a coxph or survfit model

autoplot.rpart

Generate a ggplot for an rpart object

genSurv

Generate survival data

survMisc-package

Miscellaneous Functions for Survival Analysis.

lrSS

Sample size required to show difference in survival by log-rank test given prior information about Kaplan-Meier estimate

sig

Significiance tests of coefficients in a coxph model

gamTerms

Individual terms of a Generalized Additive or Cox Proportional Hazards Model

multi

Multiple coxph models

plot.Surv

Plot Survival object

mean.Surv

Mean for Surv object

tneBMT

Time, no. at risk, no. events for BMT data

whas100

Worcester Heart Attack Study WHAS100 Data

tneKidney

Time, no. at risk, no. events for kidney

comp

Compare survival curves

mpip

Multi-center Post-Infarction Project

gastric

gastric cancer trial data

as.Surv

Convert time and status to a right-censored survival object, ordered by time

Diagnostics for coxph models

Dataset.

air

Environmental data timeseries

Information criterion

Confidence intervals for survival curves

whas500

Worcester Heart Attack Study WHAS500 Data

cutp

Cutpoint for a continuous variable in a coxph or survfit model

tableRhs

Table the outcome against all predictors in a formula

plot.MultiCoxph

Plot a multi.coxph object

Estimates of survival (or hazard) function based on $n$ and $e$

autoplot.survfit

Generate a ggplot for a survfit object

quantile

Quantiles and median for Surv, survfit and coxph objects

plotTerm

Plot individual terms of a Generalized Additive gam or Cox Proportional Hazards coxph Model

local

Local tests for a model

tne

Time, No. at risk, No. events

gof

Goodness of fit test for coxph models