alarms

alarms<-

upperbound

upperbound<-

control

control<-

epoch

epoch<-

observed

observed<-

population

population<-

multinomialTS

multinomialTS<-

neighbourhood

neighbourhood<-

For almost every slot of the <code>"sts"</code> class, package <pkg>surveillance</pkg>
 defines a generic function of the same name (except for the <code>population</code>
 method where the slot is actually called <code>populationFrac</code>, and
 <code>alarms</code>, where the slot is actually called <code>alarm</code>) as well as
 a replacement version (<code>&lt;-</code>) to extract or set the corresponding slot of
 a <code>sts</code> object.
 (This documentation is not really valid yet.)

methods

stsSlot-generics

A package implementing statistical methods for the
        modeling and change-point detection in time series of counts,
        proportions and categorical data, as well as for the modeling
        of continuous-time epidemic phenomena, e.g. discrete-space
        setups such as the spatially enriched
        Susceptible-Exposed-Infectious-Recovered (SEIR) models for
        surveillance data, or continuous-space point process data such
        as the occurrence of disease or earthquakes. Main focus is on
        outbreak detection in count data time series originating from
        public health surveillance of infectious diseases, but
        applications could just as well originate from environmetrics,
        reliability engineering, econometrics or social sciences.
        Currently the package contains implementations of typical
        outbreak detection procedures such as Stroup et. al (1989),
        Farrington et al (1996), Rossi et al (1999), Rogerson and
        Yamada (2001), a Bayesian approach, negative binomial CUSUM
        methods and a detector based on generalized likelihood ratios.
        Furthermore, inference methods for the retrospective infectious
        disease model in Held et al (2005), Held et al (2006), Paul et
        al (2008) and Paul and Held (2011) are provided. A novel CUSUM
        approach combining logistic and multinomial logistic modelling
        is also included.  Continuous self-exciting spatio-temporal
        point processes are modeled through additive-multiplicative
        conditional intensities as described in H�hle (2009)
        ("twinSIR", discrete space) and Meyer et al (2012) ("twinstim",
        continuous space).  The package contains several real-world
        datasets, the ability to simulate outbreak data, visualize the
        results of the monitoring in temporal, spatial or
        spatio-temporal fashion.

Michael Hhle

surveillance

Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
        Phenomena

stsSlot-generics function

Generic functions to access <code>"sts"</code> slots

stsSlot-generics: Generic functions to access `"sts"` slots

Description

Arguments

See Also