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surveyPrev

R package to process and map prevalence of common DHS indicators.

Installation

To install and load the latest version of surveyPrev package, use the following command.

library(devtools)
install_github("richardli/SUMMER")
install_github("richardli/surveyPrev")

library(surveyPrev)

Please note that the surveyPrev package is developed concurrently with the SUMMER package, so it is highly recommended that you update both packages to the latest version on Github first.

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Version

Install

install.packages('surveyPrev')

Monthly Downloads

255

Version

1.0.0

License

GPL (>= 2)

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/richardli/surveyPrev

Maintainer

Qianyu Dong

Last Published

April 10th, 2024

Functions in surveyPrev (1.0.0)

Download DHS survey data

CN_NUTS_C_HA2 stunting Children stunted NT_CH_NUT.do PR "Stunted child under 5 years" Stunting rate (Prevalence of stunted (HAZ < -2) children under five (0-59 months)) Percentage of children under age five stunted (below -2 standard deviations of height-for-age according to the WHO standard).

Function to obtain subnational estimates from DHS API

Function to threshold population raster to obtain urban/rural fractions by Admin1 and Admin2 areas

Get scatter plot for any two model results

ph_sani_improve

WS_TLET_H_IMP Percentage of households using an improved sanitation facility PH_SANI.do PR ph_sani_improve "Access to improved sanitation" country-specific

WS_TLET_P_BAS Population with access to a basic sanitation service WS_TLET_P_BAS in DHS API PH_SANI.do PR ph_sani_basic "Basic sanitation facility"

AN_NUTS_W_THN Women who are thin according to BMI (<18.5) NT_WM_NUT.do "Thin BMI - women" IR !!!!!!!! Underweight (Prevalence of underweight (BMI < 18.5) women of reproductive age)

RH_ANCN_W_N4P ancvisit4+ RH_ANCN_W_N4P IR Antenatal visits for pregnancy: 4+ visits

HA_HIVP_W_HIV hv_hiv_pos "HIV positive test result"

surveyPrevIndicators

Table of built-in indicators.

ML_ITNA_P_ACC Households with at least one insecticide-treated mosquito net (ITN) for every two persons who stayed in the household the previous night Persons with access to an insecticide-treated mosquito net (ITN) ML_NETS_HH.do HR Households with >1 ITN per 2 household members Percentage of households with at least one ITN for every 2 persons who stayed in the household last night

watersource_adj

WS_SRCE_P_BAS Population using a basic water source PH_WATER.do ph_wtr_basic "Basic water service" PR

CN_NUTS_C_WH2 wasting Children wasted NT_CH_NUT.do PR "Wasted child under 5 years" Wasting rate (Prevalence of wasted (HAZ < -2) children under five (0-59 months)) Percentage of children under age five with a weight-for-height z-score (WHZ) more than two standard deviations below the median WHO growth standards.

Get scatter plot for any two model results

RH_DELA_C_SKP IR or BR Assistance during delivery from a skilled provider

CN_ANMC_C_ANY Children with any anemia "Any anemia - child 6-59 months" PR NT_CH_NUT.do Children under five with any anemia

Download DHS geo data

CN_BRFS_C_EXB Children exclusively breastfed NT_IYCF.do KR "Exclusively breastfed - last-born under 6 months" Children exclusively breastfed (Prevalence of exclusive breastfeeding of children under six months of age)

getDHSindicator

Process DHS data

AN_ANEM_W_ANY womananemia nt_wm_any_anem "Any anemia - women" NT_WM_NUT.do Percentage of women aged 15-49 classified as having any anemia

Get population information

CM_ECMR_C_NNR nmr CM_ECMR_C_NNR BR (not from dhs github) Neonatal mortality rate !!!!!!

ch_allvac_either

CH_VACS_C_BAS Children with all 8 basic vaccinations (age 12-23) "All basic vaccinations according to either source"

Admin 2 Polygon Map for Zambia.

CH_VACC_C_MSL MCV: Measles Measles vaccination received Percentage of children (age 12-23) ch_meas_either CH_VAC.do KR "Measles vaccination according to either source"

aggSurveyWeight

Get survey weight by admin levels

Get admin information

ch_diar_ors_rhf

CH_DIAT_C_ORT KR Diarrhea treatment (Children under five with diarrhea treated with either ORS or RHF)

ch_novac_either

CH_VACS_C_NON KR Children with no vaccinations (age 12-23)

FP_NADA_W_UNT #unmet_family IRdata women with an unmet need for family planning for spacing and limiting

Calculate direct estimates

ch_pent3_either

CH_VACC_C_DP3 DPT3 KR Percentage of children (age 12-23) Pentavalent 3rd dose vaccination according to either source"

ch_pent1_either

CH_VACC_C_DP1 KR Percentage of children (age 12-23) Pentavalent 1rd dose vaccination according to either source"

Calculate smoothed direct estimates

Calculate cluster model estimates using beta binomial model

Get cluster information

Population estimates for Women of age 15 to 49 in Zambia in 2018.

Admin 1 Polygon Map for Zambia.

FP_CUSM_W_MOD IRdata Modern contraceptive prevalence rate (Married women currently using any modern method of contraception)