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survival (version 2.41-2)

Survival Analysis

Description

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

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Install

install.packages('survival')

Monthly Downloads

98,782

Version

2.41-2

License

LGPL (>= 2)

Issues

Pull Requests

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Maintainer

Terry Therneau

Last Published

March 16th, 2017

Functions in survival (2.41-2)

cox.zph

flchain

Assay of serum free light chain for 7874 subjects.
frailty

mgus

Monoclonal gammapothy data
mgus2

Monoclonal gammapothy data
plot.aareg

plot.cox.zph

quantile.survfit

Quantiles from a survfit object
ratetable

Ratetable reference in formula
strata

coxph

summary.aareg

survConcordance

survSplit

Split a survival data set at specified times
survfit.coxph

survfit.formula

bladder

Bladder Cancer Recurrences
cch

Fits proportional hazards regression model to case-cohort data
cipoisson

Confidence limits for the Poisson
clogit

Conditional logistic regression
aml

Acute Myelogenous Leukemia survival data
anova.coxph

Analysis of Deviance for a Cox model.
coxph.object

coxph.wtest

Compute a quadratic form
pbc

Mayo Clinic Primary Biliary Cirrhosis Data
is.ratetable

kidney

Kidney catheter data
logan

Data from the 1972-78 GSS data used by Logan
lung

NCCTG Lung Cancer Data
nwtco

Data from the National Wilm's Tumor Study
ovarian

Ovarian Cancer Survival Data
stanford2

More Stanford Heart Transplant data
statefig

Draw a state space figure.
survexp.fit

attrassign

Create new-style "assign" attribute
basehaz

Alias for the survfit function
cgd

Chronic Granulotomous Disease data
cgd0

Chronic Granulotomous Disease data
myeloid

Acute myeloid leukemia
neardate

predict.survreg

print.aareg

pspline

Smoothing splines using a pspline basis
pyears

summary.coxph

summary.pyears

Summary function for pyears objecs
genfan

Generator fans
survexp.object

survfit.matrix

Create Aalen-Johansen estimates of multi-state survival from
survfit.object

untangle.specials

uspop2

Projected US Population
pbcseq

Mayo Clinic Primary Biliary Cirrhosis, sequential data
residuals.survreg

Compute Residuals for `survreg' Objects
ratetableDate

Convert date objects to ratetable form
rats

Rat treatment data from Mantel et al
retinopathy

Diabetic Retinopathy
summary.survexp

Summary function for a survexp object
summary.survfit

survfitcoxph.fit

survreg.control

Package options for survreg and coxph
survreg.distributions

Parametric Survival Distributions
tobin

Tobin's Tobit data
survival-internal

Internal survival functions
transplant

Liver transplant waiting list
veteran

Veterans' Administration Lung Cancer study
Surv

aareg

cluster

colon

Chemotherapy for Stage B/C colon cancer
model.frame.coxph

Model.frame method for coxph objects
model.matrix.coxph

plot.survfit

predict.coxph

print.summary.survfit

aeqSurv

Adjudicate near ties in a Surv object
agreg.fit

Cox model fitting functions
coxph.control

Ancillary arguments for controlling coxph fits
coxph.detail

dsurvreg

finegray

Create data for a Fine-Gray model
lines.survfit

print.summary.coxph

logLik.coxph

logLik method for a Cox model
print.survfit

rhDNase

rhDNASE data set
ridge

Ridge regression
survdiff

heart

Stanford Heart Transplant data
survexp

ratetables

survreg.object

survfit

Create survival curves
survregDtest

Verify a survreg distribution
print.summary.survexp

Print Survexp Summary
rats2

Rat data from Gail et al.
residuals.coxph

survobrien

survreg

tcut

Factors for person-year calculations
tmerge

Time based merge for survival data