survival v2.41-2

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
cox.zph
flchain Assay of serum free light chain for 7874 subjects.
frailty
mgus Monoclonal gammapothy data
mgus2 Monoclonal gammapothy data
plot.aareg
plot.cox.zph
quantile.survfit Quantiles from a survfit object
ratetable Ratetable reference in formula
strata
coxph
summary.aareg
survConcordance
survSplit Split a survival data set at specified times
survfit.coxph
survfit.formula
bladder Bladder Cancer Recurrences
cch Fits proportional hazards regression model to case-cohort data
cipoisson Confidence limits for the Poisson
clogit Conditional logistic regression
aml Acute Myelogenous Leukemia survival data
anova.coxph Analysis of Deviance for a Cox model.
coxph.object
coxph.wtest Compute a quadratic form
pbc Mayo Clinic Primary Biliary Cirrhosis Data
is.ratetable
kidney Kidney catheter data
logan Data from the 1972-78 GSS data used by Logan
lung NCCTG Lung Cancer Data
nwtco Data from the National Wilm's Tumor Study
ovarian Ovarian Cancer Survival Data
stanford2 More Stanford Heart Transplant data
statefig Draw a state space figure.
survexp.fit
attrassign Create new-style "assign" attribute
basehaz Alias for the survfit function
cgd Chronic Granulotomous Disease data
cgd0 Chronic Granulotomous Disease data
myeloid Acute myeloid leukemia
neardate
predict.survreg
print.aareg
pspline Smoothing splines using a pspline basis
pyears
summary.coxph
summary.pyears Summary function for pyears objecs
genfan Generator fans
survexp.object
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from
survfit.object
untangle.specials
uspop2 Projected US Population
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
residuals.survreg Compute Residuals for `survreg' Objects
ratetableDate Convert date objects to ratetable form
rats Rat treatment data from Mantel et al
retinopathy Diabetic Retinopathy
summary.survexp Summary function for a survexp object
summary.survfit
survfitcoxph.fit
survreg.control Package options for survreg and coxph
survreg.distributions Parametric Survival Distributions
tobin Tobin's Tobit data
survival-internal Internal survival functions
transplant Liver transplant waiting list
veteran Veterans' Administration Lung Cancer study
Surv
aareg
cluster
colon Chemotherapy for Stage B/C colon cancer
model.frame.coxph Model.frame method for coxph objects
model.matrix.coxph
plot.survfit
predict.coxph
print.summary.survfit
aeqSurv Adjudicate near ties in a Surv object
agreg.fit Cox model fitting functions
coxph.control Ancillary arguments for controlling coxph fits
coxph.detail
dsurvreg
finegray Create data for a Fine-Gray model
lines.survfit
print.summary.coxph
logLik.coxph logLik method for a Cox model
print.survfit
rhDNase rhDNASE data set
ridge Ridge regression
survdiff
heart Stanford Heart Transplant data
survexp
ratetables
survreg.object
survfit Create survival curves
survregDtest Verify a survreg distribution
print.summary.survexp Print Survexp Summary
rats2 Rat data from Gail et al.
residuals.coxph
survobrien
survreg
tcut Factors for person-year calculations
tmerge Time based merge for survival data
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Details

Priority recommended
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2017-03-09 14:09:05 UTC; therneau
Repository CRAN
Date/Publication 2017-03-16 13:24:25 UTC

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