survival v2.43-3

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
anova.coxph Analysis of Deviance for a Cox model.
aml Acute Myelogenous Leukemia survival data
aareg Aalen's additive regression model for censored data
basehaz Alias for the survfit function
aeqSurv Adjudicate near ties in a Surv object
attrassign Create new-style "assign" attribute
cch Fits proportional hazards regression model to case-cohort data
cgd0 Chronic Granulotomous Disease data
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
bladder Bladder Cancer Recurrences
clogit Conditional logistic regression
coxph Fit Proportional Hazards Regression Model
coxph.control Ancillary arguments for controlling coxph fits
cgd Chronic Granulotamous Disease data
cipoisson Confidence limits for the Poisson
coxph.object Proportional Hazards Regression Object
coxph.detail Details of a Cox Model Fit
frailty Random effects terms
logan Data from the 1972-78 GSS data used by Logan
cluster Identify clusters.
genfan Generator fans
mgus Monoclonal gammopathy data
lung NCCTG Lung Cancer Data
mgus2 Monoclonal gammopathy data
plot.aareg Plot an aareg object.
plot.cox.zph Graphical Test of Proportional Hazards
plot.survfit Plot method for survfit objects
finegray Create data for a Fine-Gray model
flchain Assay of serum free light chain for 7874 subjects.
rhDNase rhDNASE data set
predict.coxph Predictions for a Cox model
ridge Ridge regression
coxph.wtest Compute a quadratic form
summary.pyears Summary function for pyears objecs
kidney Kidney catheter data
heart Stanford Heart Transplant data
summary.survexp Summary function for a survexp object
is.ratetable Verify that an object is of class ratetable.
nwtco Data from the National Wilm's Tumor Study
ovarian Ovarian Cancer Survival Data
myeloid Acute myeloid leukemia
survSplit Split a survival data set at specified times
survdiff Test Survival Curve Differences
survreg Regression for a Parametric Survival Model
predict.survreg Predicted Values for a `survreg' Object
survreg.control Package options for survreg and coxph
neardate Find the index of the closest value in data set 2, for each entry in data set one.
vcov.coxph Variance-covariance matrix
print.aareg Print an aareg object
ratetableDate Convert date objects to ratetable form
levels.Surv Return the states of a multi-state Surv object
solder Data from a soldering experiment
rats Rat treatment data from Mantel et al
model.frame.coxph Model.frame method for coxph objects
veteran Veterans' Administration Lung Cancer study
model.matrix.coxph Model.matrix method for coxph models
pspline Smoothing splines using a pspline basis
print.summary.coxph Print method for summary.coxph objects
pyears Person Years
print.summary.survexp Print Survexp Summary
quantile.survfit Quantiles from a survfit object
residuals.survreg Compute Residuals for `survreg' Objects
Surv Create a Survival Object
ratetable Rate table structure
retinopathy Diabetic Retinopathy
stanford2 More Stanford Heart Transplant data
statefig Draw a state space figure.
survfit.formula Compute a Survival Curve for Censored Data
summary.survfit Summary of a Survival Curve
strata Identify Stratification Variables
Surv-methods Methods for Surv objects
survConcordance Compute a concordance measure.
colon Chemotherapy for Stage B/C colon cancer
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
concordance Compute the concordance statistic for data or a model
survexp Compute Expected Survival
diabetic Ddiabetic retinopathy
survexp.fit Compute Expected Survival
survexp.object Expected Survival Curve Object
survreg.distributions Parametric Survival Distributions
dsurvreg Distributions available in survreg.
survival-internal Internal survival functions
ratetables Census Data Sets for the Expected Survival and Person Years Functions
survobrien O'Brien's Test for Association of a Single Variable with Survival
transplant Liver transplant waiting list
survfit.object Survival Curve Object
survreg.object Parametric Survival Model Object
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
lines.survfit Add Lines or Points to a Survival Plot
xtfrm.Surv Sorting order for Surv objects
udca Data from a trial of usrodeoxycholic acid
untangle.specials Help Process the `specials' Argument of the `terms' Function.
uspop2 Projected US Population
yates Population prediction
yates_setup Method for adding new models to the yates function.
logLik.coxph logLik method for a Cox model
pbc Mayo Clinic Primary Biliary Cirrhosis Data
print.survfit Print a Short Summary of a Survival Curve
print.summary.survfit Print Survfit Summary
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
rats2 Rat data from Gail et al.
residuals.coxph Calculate Residuals for a `coxph' Fit
summary.aareg Summarize an aareg fit
summary.coxph Summary method for Cox models
survfit Create survival curves
survfit.coxph Compute a Survival Curve from a Cox model
survregDtest Verify a survreg distribution
tcut Factors for person-year calculations
tmerge Time based merge for survival data
tobin Tobin's Tobit data
agreg.fit Cox model fitting functions
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Vignettes of survival

Name
adjcurve.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
population.Rnw
refer.bib
splines.Rnw
temp.r
tests.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Last month downloads

Details

Priority recommended
Date 2018-11-13
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2018-11-26 16:26:23 UTC; therneau
Repository CRAN
Date/Publication 2018-11-26 23:00:03 UTC

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