survival v2.44-1.1

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
cgd0 Chronic Granulotomous Disease data
Surv Create a Survival Object
Surv-methods Methods for Surv objects
mgus Monoclonal gammopathy data
coxph.wtest Compute a quadratic form
anova.coxph Analysis of Deviance for a Cox model.
diabetic Ddiabetic retinopathy
attrassign Create new-style "assign" attribute
logan Data from the 1972-78 GSS data used by Logan
colon Chemotherapy for Stage B/C colon cancer
aareg Aalen's additive regression model for censored data
basehaz Alias for the survfit function
mgus2 Monoclonal gammopathy data
model.frame.coxph Model.frame method for coxph objects
model.matrix.coxph Model.matrix method for coxph models
agreg.fit Cox model fitting functions
aeqSurv Adjudicate near ties in a Surv object
aml Acute Myelogenous Leukemia survival data
bladder Bladder Cancer Recurrences
ratetableDate Convert date objects to ratetable form
concordancefit Compute the concordance
lung NCCTG Lung Cancer Data
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
concordance Compute the concordance statistic for data or a model
clogit Conditional logistic regression
pbc Mayo Clinic Primary Biliary Cirrhosis Data
dsurvreg Distributions available in survreg.
cluster Identify clusters.
coxph.detail Details of a Cox Model Fit
coxph.object Proportional Hazards Regression Object
rats Rat treatment data from Mantel et al
kidney Kidney catheter data
flchain Assay of serum free light chain for 7874 subjects.
summary.survexp Summary function for a survexp object
cch Fits proportional hazards regression model to case-cohort data
summary.survfit Summary of a Survival Curve
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
cgd Chronic Granulotamous Disease data
print.summary.survfit Print Survfit Summary
levels.Surv Return the states of a multi-state Surv object
finegray Create data for a Fine-Gray model
plot.aareg Plot an aareg object.
frailty Random effects terms
heart Stanford Heart Transplant data
plot.cox.zph Graphical Test of Proportional Hazards
lines.survfit Add Lines or Points to a Survival Plot
survdiff Test Survival Curve Differences
logLik.coxph logLik method for a Cox model
coxph Fit Proportional Hazards Regression Model
pspline Smoothing splines using a pspline basis
pyears Person Years
coxph.control Ancillary arguments for controlling coxph fits
is.ratetable Verify that an object is of class ratetable.
myeloid Acute myeloid leukemia
neardate Find the index of the closest value in data set 2, for each entry in data set one.
residuals.coxph Calculate Residuals for a `coxph' Fit
residuals.survreg Compute Residuals for `survreg' Objects
nwtco Data from the National Wilm's Tumor Study
print.survfit Print a Short Summary of a Survival Curve
retinopathy Diabetic Retinopathy
strata Identify Stratification Variables
survexp Compute Expected Survival
rhDNase rhDNASE data set
predict.survreg Predicted Values for a `survreg' Object
summary.coxph Summary method for Cox models
survreg.control Package options for survreg and coxph
survreg.distributions Parametric Survival Distributions
veteran Veterans' Administration Lung Cancer study
plot.survfit Plot method for survfit objects
summary.pyears Summary function for pyears objecs
survConcordance Compute a concordance measure.
print.aareg Print an aareg object
stanford2 More Stanford Heart Transplant data
ovarian Ovarian Cancer Survival Data
xtfrm.Surv Sorting order for Surv objects
predict.coxph Predictions for a Cox model
statefig Draw a state space figure.
print.summary.coxph Print method for summary.coxph objects
survSplit Split a survival data set at specified times
print.summary.survexp Print Survexp Summary
quantile.survfit Quantiles from a survfit object
summary.aareg Summarize an aareg fit
ratetable Rate table structure
survfit.coxph Compute a Survival Curve from a Cox model
rats2 Rat data from Gail et al.
reliability Reliability data sets
survexp.fit Compute Expected Survival
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
survexp.object Expected Survival Curve Object
survobrien O'Brien's Test for Association of a Single Variable with Survival
ridge Ridge regression
survfit.formula Compute a Survival Curve for Censored Data
survreg Regression for a Parametric Survival Model
survival-internal Internal survival functions
survreg.object Parametric Survival Model Object
survregDtest Verify a survreg distribution
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
uspop2 Projected US Population
udca Data from a trial of usrodeoxycholic acid
solder Data from a soldering experiment
tcut Factors for person-year calculations
ratetables Census Data Sets for the Expected Survival and Person Years Functions
survfit.object Survival Curve Object
tmerge Time based merge for survival data
vcov.coxph Variance-covariance matrix
yates Population prediction
yates_setup Method for adding new models to the yates function.
survfit Create survival curves
untangle.specials Help Process the `specials' Argument of the `terms' Function.
tobin Tobin's Tobit data
transplant Liver transplant waiting list
cipoisson Confidence limits for the Poisson
No Results!

Vignettes of survival

Name
adjcurve.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
population.Rnw
refer.bib
splines.Rnw
survival.Rnw
tests.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Last month downloads

Details

Priority recommended
Date 2019-03-27
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2019-04-01 08:25:51 UTC; ripley
Repository CRAN
Date/Publication 2019-04-01 08:42:36 UTC

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