survival v2.9-6
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Survival analysis, including penalised likelihood.
survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model. Delayed entry
(truncation) allowed for all models; interval censoring for parametric
models.
Functions in survival
| Name | Description | |
| cox.zph | Test the Proportional Hazards Assumption of a Cox Regression | |
| date.mmddyy | Format a Julian date | |
| attrassign | Create new-style "assign" attribute | |
| bladder | Bladder Cancer Recurrences | |
| cluster | Identify Clusters | |
| lung | Mayo Clinic Lung Cancer Data | |
| date.object | Date Objects | |
| clogit | Conditional logistic regression | |
| colon | Chemotherapy for Stage B/C colon cancer | |
| coxph | Fit Proportional Hazards Regression Model | |
| date.mmddyyyy | Format a Julian date | |
| pbc | Mayo Clinic Primary Biliary Cirrhosis Data | |
| anova.coxph | Analysis of Deviance for Cox model. | |
| as.date | Coerce Data to Dates | |
| Surv | Create a Survival Object | |
| date.mdy | Convert from Julian Dates to Month, Day, and Year | |
| kidney | Kidney data from survival5 | |
| ovarian | Ovarian cancer survival data | |
| coxph.object | Proportional Hazards Regression Object | |
| coxph.detail | Details of a Cox Model Fit | |
| date.ddmmmyy | Format a Julian date | |
| aml | Acute Myelogenous Leukemia survival data | |
| survreg.distributions | Parametric Survival Distributions | |
| mdy.date | Convert to Julian Dates | |
| stanford2 | More Stanford Heart Transplant data | |
| heart | Stanford Heart Transplant data | |
| survobrien | O'Brien's Test for Association of a Single Variable with Survival | |
| survreg | Regression for a Parametric Survival Model | |
| survreg.old | Old (survival4) Regression for a parametric survival model | |
| plot.cox.zph | Graphical Test of Proportional Hazards | |
| survfit | Compute a Survival Curve for Censored Data | |
| predict.survreg | Predicted Values for a `survreg' Object | |
| veteran | Veterans' Administration Lung Cancer study | |
| pspline | Penalised smoothing splines | |
| plot.survfit | Plot Method for `survfit' | |
| is.ratetable | Verify that an Object is of Class `ratetable' | |
| strata | Identify Strata Variables | |
| predict.coxph | Predictions for Cox model | |
| residuals.survreg | Compute Residuals for `survreg' Objects | |
| ratetables | Census Data Sets for the Expected Survival and Person Years Functions | |
| survexp | Compute Expected Survival | |
| untangle.specials | Help Process the `specials' Argument of the `terms' Function. | |
| ratetable | Ratetable reference in formula | |
| survreg.control | Package options for survreg and coxph | |
| ridge | Ridge regression | |
| survival-internal | Internal survival functions | |
| survreg.object | Parametric Survival Model Object | |
| frailty | (Approximate) Frailty models | |
| summary.survfit | Summary of a Survival Curve | |
| print.survfit | Print a Short Summary of a Survival Curve | |
| rats | Rat data from survival5 | |
| residuals.coxph | Calculate Residuals for a `coxph' Fit | |
| tcut | Factors for person-year calculations | |
| lines.survfit | Add Lines or Points to a Survival Plot | |
| survdiff | Test Survival Curve Differences | |
| survexp.fit | Work Function to Compute Expected Survival | |
| survfit.object | Survival Curve Object | |
| pyears | Person Years | |
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Details
| Priority | recommended |
| Requires | R (>= 1.4.0) |
| License | GPL2 |
| Contributors | S by Terry Therneau, ported Thomas Lumley |
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