survival v3.1-12

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
basehaz Alias for the survfit function
concordancefit Compute the concordance
clogit Conditional logistic regression
cch Fits proportional hazards regression model to case-cohort data
cgd0 Chronic Granulotomous Disease data
cluster Identify clusters.
lines.survfit Add Lines or Points to a Survival Plot
coxph Fit Proportional Hazards Regression Model
cipoisson Confidence limits for the Poisson
diabetic Ddiabetic retinopathy
coxph.wtest Compute a quadratic form
cgd Chronic Granulotamous Disease data
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
mgus2 Monoclonal gammopathy data
coxph.control Ancillary arguments for controlling coxph fits
attrassign Create new-style "assign" attribute
dsurvreg Distributions available in survreg.
aml Acute Myelogenous Leukemia survival data
levels.Surv Return the states of a multi-state Surv object
lung NCCTG Lung Cancer Data
nafld Non-alcohol fatty liver disease
print.summary.survexp Print Survexp Summary
survexp.fit Compute Expected Survival
heart Stanford Heart Transplant data
coxsurv.fit A direct interface to the `computational engine' of survfit.coxph
pbc Mayo Clinic Primary Biliary Cirrhosis Data
stanford2 More Stanford Heart Transplant data
flchain Assay of serum free light chain for 7874 subjects.
finegray Create data for a Fine-Gray model
coxph.object Proportional Hazards Regression Object
colon Chemotherapy for Stage B/C colon cancer
plot.survfit Plot method for survfit objects
neardate Find the index of the closest value in data set 2, for each entry in data set one.
logLik.coxph logLik method for a Cox model
frailty Random effects terms
ratetableDate Convert date objects to ratetable form
summary.coxph Summary method for Cox models
strata Identify Stratification Variables
nwtco Data from the National Wilm's Tumor Study
rats Rat treatment data from Mantel et al
print.summary.coxph Print method for summary.coxph objects
logan Data from the 1972-78 GSS data used by Logan
predict.coxph Predictions for a Cox model
ovarian Ovarian Cancer Survival Data
mgus Monoclonal gammopathy data
retinopathy Diabetic Retinopathy
print.summary.survfit Print Survfit Summary
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
survcheck Checks of a survival data set
udca Data from a trial of usrodeoxycholic acid
summary.survfit Summary of a Survival Curve
concordance Compute the concordance statistic for data or a model
survfit0 Convert the format of a survfit object.
model.frame.coxph Model.frame method for coxph objects
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
quantile.survfit Quantiles from a survfit object
plot.aareg Plot an aareg object.
summary.aareg Summarize an aareg fit
reliability Reliability data sets
survival-internal Internal survival functions
uspop2 Projected US Population
print.survfit Print a Short Summary of a Survival Curve
ridge Ridge regression
ratetable Rate table structure
pspline Smoothing splines using a pspline basis
tobin Tobin's Tobit data
survdiff Test Survival Curve Differences
is.ratetable Verify that an object is of class ratetable.
coxph.detail Details of a Cox Model Fit
survreg Regression for a Parametric Survival Model
transplant Liver transplant waiting list
survexp.object Expected Survival Curve Object
summary.pyears Summary function for pyears objecs
residuals.survreg Compute Residuals for `survreg' Objects
survobrien O'Brien's Test for Association of a Single Variable with Survival
statefig Draw a state space figure.
vcov.coxph Variance-covariance matrix
predict.survreg Predicted Values for a `survreg' Object
kidney Kidney catheter data
residuals.coxph Calculate Residuals for a `coxph' Fit
model.matrix.coxph Model.matrix method for coxph models
survexp Compute Expected Survival
myeloid Acute myeloid leukemia
plot.cox.zph Graphical Test of Proportional Hazards
rats2 Rat data from Gail et al.
veteran Veterans' Administration Lung Cancer study
survConcordance Compute a concordance measure.
survfit.object Survival Curve Object
survreg.distributions Parametric Survival Distributions
summary.survexp Summary function for a survexp object
tcut Factors for person-year calculations
survSplit Split a survival data set at specified times
rhDNase rhDNASE data set
survfit.coxph Compute a Survival Curve from a Cox model
survfit Create survival curves
xtfrm.Surv Sorting order for Surv objects
pyears Person Years
solder Data from a soldering experiment
tmerge Time based merge for survival data
ratetables Census Data Sets for the Expected Survival and Person Years Functions
print.aareg Print an aareg object
survreg.object Parametric Survival Model Object
survregDtest Verify a survreg distribution
survfit.formula Compute a Survival Curve for Censored Data
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
survreg.control Package options for survreg and coxph
yates Population prediction
yates_setup Method for adding new models to the yates function.
untangle.specials Help Process the `specials' Argument of the `terms' Function.
Surv Create a Survival Object
aeqSurv Adjudicate near ties in a Surv object
bladder Bladder Cancer Recurrences
agreg.fit Cox model fitting functions
aareg Aalen's additive regression model for censored data
anova.coxph Analysis of Deviance for a Cox model.
Surv-methods Methods for Surv objects
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Vignettes of survival

Name
adjcurve.Rnw
approximate.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
other.Rnw
population.Rnw
refer.bib
splines.Rnw
survival.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Details

Priority recommended
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2020-04-02 17:45:14 UTC; therneau
Repository CRAN
Date/Publication 2020-04-10 08:20:02 UTC

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