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survival (version 3.1-6)

Survival Analysis

Description

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

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Install

install.packages('survival')

Monthly Downloads

173,894

Version

3.1-6

License

LGPL (>= 2)

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Repository

https://github.com/therneau/survival

Maintainer

Terry Therneau

Last Published

November 6th, 2019

Functions in survival (3.1-6)

Create a Survival Object

Analysis of Deviance for a Cox model.

Aalen's additive regression model for censored data

Alias for the survfit function

Cox model fitting functions

Bladder Cancer Recurrences

Methods for Surv objects

Create new-style "assign" attribute

Acute Myelogenous Leukemia survival data

Adjudicate near ties in a Surv object

Conditional logistic regression

Compute a quadratic form

Compute the concordance

Test the Proportional Hazards Assumption of a Cox Regression

A direct interface to the `computational engine' of survfit.coxph

Monoclonal gammopathy data

Confidence limits for the Poisson

NCCTG Lung Cancer Data

Chronic Granulotomous Disease data

Chemotherapy for Stage B/C colon cancer

logLik method for a Cox model

Data from the 1972-78 GSS data used by Logan

Ddiabetic retinopathy

Distributions available in survreg.

Create data for a Fine-Gray model

Data from the National Wilm's Tumor Study

Monoclonal gammopathy data

Compute the concordance statistic for data or a model

print.summary.survfit

Print Survfit Summary

Assay of serum free light chain for 7874 subjects.

Verify that an object is of class ratetable.

Print a Short Summary of a Survival Curve

Identify clusters.

model.frame.coxph

Model.frame method for coxph objects

Diabetic Retinopathy

Fits proportional hazards regression model to case-cohort data

rhDNASE data set

Chronic Granulotamous Disease data

predict.survreg

Predicted Values for a `survreg' Object

Print an aareg object

Plot an aareg object.

Mayo Clinic Primary Biliary Cirrhosis Data

Graphical Test of Proportional Hazards

Kidney catheter data

Mayo Clinic Primary Biliary Cirrhosis, sequential data

Rate table structure

quantile.survfit

Quantiles from a survfit object

residuals.coxph

Calculate Residuals for a `coxph' Fit

Identify Stratification Variables

Summarize an aareg fit

residuals.survreg

Compute Residuals for `survreg' Objects

Rat data from Gail et al.

Details of a Cox Model Fit

Ovarian Cancer Survival Data

Proportional Hazards Regression Object

survConcordance

Compute a concordance measure.

Expected Survival Curve Object

Ridge regression

Data from a soldering experiment

Reliability data sets

Random effects terms

Census Data Sets for the Expected Survival and Person Years Functions

Ancillary arguments for controlling coxph fits

Fit Proportional Hazards Regression Model

Return the states of a multi-state Surv object

O'Brien's Test for Association of a Single Variable with Survival

Regression for a Parametric Survival Model

Checks of a survival data set

Stanford Heart Transplant data

Test Survival Curve Differences

model.matrix.coxph

Model.matrix method for coxph models

Survival Curve Object

Convert the format of a survfit object.

Data from a trial of usrodeoxycholic acid

untangle.specials

Help Process the `specials' Argument of the `terms' Function.

Population prediction

Acute myeloid leukemia

print.summary.coxph

Print method for summary.coxph objects

print.summary.survexp

Print Survexp Summary

Split a survival data set at specified times

Add Lines or Points to a Survival Plot

Find the index of the closest value in data set 2, for each entry in data set one.

Plot method for survfit objects

Non-alcohol fatty liver disease

Predictions for a Cox model

Method for adding new models to the yates function.

Parametric Survival Model Object

Verify a survreg distribution

Smoothing splines using a pspline basis

Rat treatment data from Mantel et al

Convert date objects to ratetable form

More Stanford Heart Transplant data

Draw a state space figure.

Tobin's Tobit data

summary.survexp

Summary function for a survexp object

Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.

survfit.formula

Compute a Survival Curve for Censored Data

Projected US Population

Liver transplant waiting list

Variance-covariance matrix

survreg.control

Package options for survreg and coxph

Summary function for pyears objecs

Summary method for Cox models

Compute Expected Survival

survreg.distributions

Parametric Survival Distributions

summary.survfit

Summary of a Survival Curve

survfitcoxph.fit

A direct interface to the `computational engine' of survfit.coxph

Compute Expected Survival

survival-internal

Internal survival functions

Create survival curves

Compute a Survival Curve from a Cox model

Factors for person-year calculations

Veterans' Administration Lung Cancer study

Time based merge for survival data

Sorting order for Surv objects