survival v3.1-7

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
basehaz Alias for the survfit function
agreg.fit Cox model fitting functions
aareg Aalen's additive regression model for censored data
anova.coxph Analysis of Deviance for a Cox model.
Surv Create a Survival Object
Surv-methods Methods for Surv objects
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
concordancefit Compute the concordance
cch Fits proportional hazards regression model to case-cohort data
cgd Chronic Granulotamous Disease data
concordance Compute the concordance statistic for data or a model
colon Chemotherapy for Stage B/C colon cancer
cgd0 Chronic Granulotomous Disease data
diabetic Ddiabetic retinopathy
dsurvreg Distributions available in survreg.
cipoisson Confidence limits for the Poisson
coxph.object Proportional Hazards Regression Object
coxph.detail Details of a Cox Model Fit
coxph.wtest Compute a quadratic form
coxsurv.fit A direct interface to the `computational engine' of survfit.coxph
lung NCCTG Lung Cancer Data
logLik.coxph logLik method for a Cox model
levels.Surv Return the states of a multi-state Surv object
lines.survfit Add Lines or Points to a Survival Plot
flchain Assay of serum free light chain for 7874 subjects.
cluster Identify clusters.
finegray Create data for a Fine-Gray model
clogit Conditional logistic regression
frailty Random effects terms
model.frame.coxph Model.frame method for coxph objects
mgus Monoclonal gammopathy data
mgus2 Monoclonal gammopathy data
model.matrix.coxph Model.matrix method for coxph models
myeloid Acute myeloid leukemia
logan Data from the 1972-78 GSS data used by Logan
nwtco Data from the National Wilm's Tumor Study
nafld Non-alcohol fatty liver disease
print.summary.coxph Print method for summary.coxph objects
neardate Find the index of the closest value in data set 2, for each entry in data set one.
heart Stanford Heart Transplant data
print.summary.survexp Print Survexp Summary
coxph.control Ancillary arguments for controlling coxph fits
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
pbc Mayo Clinic Primary Biliary Cirrhosis Data
coxph Fit Proportional Hazards Regression Model
is.ratetable Verify that an object is of class ratetable.
rats2 Rat data from Gail et al.
reliability Reliability data sets
residuals.coxph Calculate Residuals for a `coxph' Fit
plot.cox.zph Graphical Test of Proportional Hazards
plot.aareg Plot an aareg object.
residuals.survreg Compute Residuals for `survreg' Objects
print.aareg Print an aareg object
predict.survreg Predicted Values for a `survreg' Object
quantile.survfit Quantiles from a survfit object
kidney Kidney catheter data
ovarian Ovarian Cancer Survival Data
ratetable Rate table structure
ratetableDate Convert date objects to ratetable form
statefig Draw a state space figure.
survConcordance Compute a concordance measure.
stanford2 More Stanford Heart Transplant data
survSplit Split a survival data set at specified times
survcheck Checks of a survival data set
ridge Ridge regression
solder Data from a soldering experiment
rats Rat treatment data from Mantel et al
survdiff Test Survival Curve Differences
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
survival-internal Internal survival functions
survfit0 Convert the format of a survfit object.
survfit.object Survival Curve Object
summary.survexp Summary function for a survexp object
plot.survfit Plot method for survfit objects
transplant Liver transplant waiting list
predict.coxph Predictions for a Cox model
pspline Smoothing splines using a pspline basis
tobin Tobin's Tobit data
survreg Regression for a Parametric Survival Model
pyears Person Years
summary.survfit Summary of a Survival Curve
survobrien O'Brien's Test for Association of a Single Variable with Survival
print.summary.survfit Print Survfit Summary
udca Data from a trial of usrodeoxycholic acid
untangle.specials Help Process the `specials' Argument of the `terms' Function.
strata Identify Stratification Variables
summary.aareg Summarize an aareg fit
print.survfit Print a Short Summary of a Survival Curve
summary.coxph Summary method for Cox models
retinopathy Diabetic Retinopathy
rhDNase rhDNASE data set
summary.pyears Summary function for pyears objecs
ratetables Census Data Sets for the Expected Survival and Person Years Functions
survreg.control Package options for survreg and coxph
survreg.distributions Parametric Survival Distributions
survfit.formula Compute a Survival Curve for Censored Data
survexp.object Expected Survival Curve Object
survreg.object Parametric Survival Model Object
survexp Compute Expected Survival
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
xtfrm.Surv Sorting order for Surv objects
veteran Veterans' Administration Lung Cancer study
vcov.coxph Variance-covariance matrix
uspop2 Projected US Population
survregDtest Verify a survreg distribution
yates_setup Method for adding new models to the yates function.
survfit Create survival curves
yates Population prediction
survexp.fit Compute Expected Survival
survfit.coxph Compute a Survival Curve from a Cox model
tcut Factors for person-year calculations
tmerge Time based merge for survival data
aml Acute Myelogenous Leukemia survival data
bladder Bladder Cancer Recurrences
aeqSurv Adjudicate near ties in a Surv object
attrassign Create new-style "assign" attribute
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Vignettes of survival

Name
adjcurve.Rnw
approximate.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
other.Rnw
population.Rnw
refer.bib
splines.Rnw
survival.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Last month downloads

Details

Priority recommended
Date 2019-11-08
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2019-11-08 22:04:52 UTC; therneau
Repository CRAN
Date/Publication 2019-11-09 05:30:02 UTC

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