survival v3.2-7

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
Surv2data Convert data from timecourse to (time1,time2) style
agreg.fit Cox model fitting functions
aml Acute Myelogenous Leukemia survival data
Surv Create a Survival Object
Surv2 Create a survival object
aareg Aalen's additive regression model for censored data
Surv-methods Methods for Surv objects
aeqSurv Adjudicate near ties in a Surv object
basehaz Alias for the survfit function
anova.coxph Analysis of Deviance for a Cox model.
colon Chemotherapy for Stage B/C colon cancer
concordance Compute the concordance statistic for data or a model
coxph.detail Details of a Cox Model Fit
coxph.object Proportional Hazards Regression Object
cch Fits proportional hazards regression model to case-cohort data
attrassign Create new-style "assign" attribute
cluster Identify clusters.
clogit Conditional logistic regression
cipoisson Confidence limits for the Poisson
cgd0 Chronic Granulotomous Disease data
diabetic Ddiabetic retinopathy
coxph.wtest Compute a quadratic form
cgd Chronic Granulotamous Disease data
frailty Random effects terms
lines.survfit Add Lines or Points to a Survival Plot
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
concordancefit Compute the concordance
coxsurv.fit A direct interface to the `computational engine' of survfit.coxph
logLik.coxph logLik method for a Cox model
gbsg Breast cancer data sets used in Royston and Altman (2013)
bladder Bladder Cancer Recurrences
coxph Fit Proportional Hazards Regression Model
coxph.control Ancillary arguments for controlling coxph fits
heart Stanford Heart Transplant data
mgus2 Monoclonal gammopathy data
finegray Create data for a Fine-Gray model
is.ratetable Verify that an object is of class ratetable.
logan Data from the 1972-78 GSS data used by Logan
mgus Monoclonal gammopathy data
print.aareg Print an aareg object
lung NCCTG Lung Cancer Data
dsurvreg Distributions available in survreg.
model.frame.coxph Model.frame method for coxph objects
print.summary.coxph Print method for summary.coxph objects
ratetable Rate table structure
ratetableDate Convert date objects to ratetable form
rttright Compute redistribute-to-the-right weights
survConcordance Compute a concordance measure.
solder Data from a soldering experiment
myeloid Acute myeloid leukemia
flchain Assay of serum free light chain for 7874 subjects.
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
nafld Non-alcohol fatty liver disease
kidney Kidney catheter data
levels.Surv Return the states of a multi-state Surv object
model.matrix.coxph Model.matrix method for coxph models
plot.aareg Plot an aareg object.
neardate Find the index of the closest value in data set 2, for each entry in data set one.
pyears Person Years
print.summary.survexp Print Survexp Summary
pbc Mayo Clinic Primary Biliary Cirrhosis Data
ovarian Ovarian Cancer Survival Data
print.summary.survfit Print Survfit Summary
survcheck Checks of a survival data set
survdiff Test Survival Curve Differences
plot.cox.zph Graphical Test of Proportional Hazards
survSplit Split a survival data set at specified times
nwtco Data from the National Wilm's Tumor Study
survregDtest Verify a survreg distribution
quantile.survfit Quantiles from a survfit object
survreg.object Parametric Survival Model Object
residuals.coxph Calculate Residuals for a `coxph' Fit
residuals.survreg Compute Residuals for `survreg' Objects
summary.coxph Summary method for Cox models
retinopathy Diabetic Retinopathy
reliability Reliability data sets
survexp.object Expected Survival Curve Object
summary.pyears Summary function for pyears objecs
ratetables Census Data Sets for the Expected Survival and Person Years Functions
survreg.control Package options for survreg and coxph
tcut Factors for person-year calculations
uspop2 Projected US Population
survreg.distributions Parametric Survival Distributions
vcov.coxph Variance-covariance matrix
rats Rat treatment data from Mantel et al
predict.coxph Predictions for a Cox model
rotterdam Breast cancer data set used in Royston and Altman (2013)
rats2 Rat data from Gail et al.
plot.survfit Plot method for survfit objects
rhDNase rhDNASE data set
pspline Smoothing splines using a pspline basis
royston Compute Royston's D for a Cox model
print.survfit Print a Short Summary of a Survival Curve
summary.survexp Summary function for a survexp object
survfit.formula Compute a Survival Curve for Censored Data
strata Identify Stratification Variables
predict.survreg Predicted Values for a `survreg' Object
summary.aareg Summarize an aareg fit
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
ridge Ridge regression
statefig Draw a state space figure.
stanford2 More Stanford Heart Transplant data
tmerge Time based merge for survival data
survobrien O'Brien's Test for Association of a Single Variable with Survival
survfit Create survival curves
yates Population prediction
yates_setup Method for adding new models to the yates function.
summary.survfit Summary of a Survival Curve
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
survreg Regression for a Parametric Survival Model
survfit.coxph Compute a Survival Curve from a Cox model
survexp Compute Expected Survival
survival-internal Internal survival functions
untangle.specials Help Process the `specials' Argument of the `terms' Function.
survexp.fit Compute Expected Survival
udca Data from a trial of usrodeoxycholic acid
veteran Veterans' Administration Lung Cancer study
xtfrm.Surv Sorting order for Surv objects
survfit0 Convert the format of a survfit object.
survfit.object Survival Curve Object
tobin Tobin's Tobit data
transplant Liver transplant waiting list
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Vignettes of survival

Name
adjcurve.Rnw
approximate.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
other.Rnw
population.Rnw
refer.bib
splines.Rnw
survival.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Last month downloads

Details

Priority recommended
Date 2020-09-24
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2020-09-25 17:55:24 UTC; therneau
Repository CRAN
Date/Publication 2020-09-28 08:20:02 UTC

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