survival666 (version 0.5)

super_survival: Batch survival analysis

Description

The super_survival is the frist function of package survival666. You can use the function to perform batch operations on the gene expression matrix to obtain the survival analysis of the entire transcriptome

Usage

super_survival(exp, time, status, p = 1e-04, title = "survival_rank", path)

Arguments

exp

Gene expression matrix .We need to use the count matrix here.Note that symbol is required for the column name and sample for the row name.

time

Time data for survival analysis.You need to make sure the sample as the row name is consistent with the gene expression matrix

status

living status of patient in survival analysis,You need to make sure the sample as the row name is consistent with the gene expression matrix too.

p

Full in the minimum significance you can accpet here.It depend on your need, but the number should not be too big,too broad results are meaningless.

title

Give a name to the file to be output

path

Set a save path for the output file

Examples

# NOT RUN {
super_survival(exp=survivaldata,
time = clinic[,3],
status = clinic[,2],
p = 0.0001,
title = 'survival_rank',
path = '/yourdir/')
# }