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sybil (version 1.0.2)

geneDel: Get Gene-Reaction Association

Description

The function geneDel finds the fluxes corresponding to gene id's.

Usage

geneDel(model, genes, checkId = FALSE)

Arguments

model
An object of class modelorg.
genes
A vector of character strings of gene id's used in model.
checkId
Boolean. If set to TRUE, argument genes will be checked wether it fits to model (e.g. are all genes existing). If set to FALSE, genes must contain indices of gene id's in m

Value

  • An integer vector of pointers to reaction id's in model or NA.

encoding

utf8

Details

The function geneDel checks for a set of gene id's in gene which fluxes this set effects.

References

Edwards, J. S., Ibarra, R. U. and Palsson, B. Ø. (2001) In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 19, 125--130.

See Also

optimizer