sybil (version 1.1.1)

shrinkMatrix-methods: Get a Subset of Matrix Like Objects

Description

Generate subsets of matrix-like objects.

Usage

## S3 method for class 'modelorg':
shrinkMatrix(X, i = NULL, j = NULL,
                                  tol = SYBIL_SETTINGS("TOLERANCE"))

Arguments

X

An object treated to be matrix-like.

i

A numeric or character vector containing row indices of the matrix given in argument X. For the modelorg method, this can be an object of class reactId. D

j

A numeric or character vector containing column indices of the matrix given in argument X. For the modelorg method, this can be an object of class reactId_Exch

tol

A tolerance value. An element $X_{ij}$ of the matrix given in argument X is considered to be zero, if $|X_{ij}| > \mathit{tol}$ is true. Default: SYBIL_SETTINGS("TOLERANCE").

Value

• The modelorg method will return an object of class Matrix, with columns named by their reaction id's and rows named by their metabolite id's.

encoding

utf8

See Also

Class modelorg.

Examples

Run this code

# get the part of the stoichiometric containing
  # the exchange reactions
  data(Ec_core)
  ex <- findExchReact(Ec_core)
  shrinkMatrix(Ec_core, j = ex)

Run the code above in your browser using DataLab