modelorg2ExPA: Write an Instance of Class modelorg to File in ExPA Format
Description
The function modelorg2ExPA writes the content of an instance of class
modelorg to text files in a format which can be read by the
program ExPA to compute extreme pathways.Usage
modelorg2ExPA(model, fname, exIntReact = NA, filepath = ".", suffix = "expa")
Arguments
fname
An single character string giving the filename to write to.
Default: .expa.
exIntReact
An object of class reactId, character or integer, giving id's
of internal reactions to exclude in the ExPA file.
Default: NA. filepath
A single character string giving the path to a certain directory in which
the output files will be stored.
Default: ".".
suffix
A single character string giving the file name extension.
Default: "expa".
Details
The function modelorg2ExPA produces input files for the program ExPA.
With ExPA, it is possible to calculate extreme pathways in metabolic networks.References
Bell, S. L. and Palsson, B. Ø. (2005) Expa: a program for calculating extreme
pathways in biochemical reaction networks. Bioinformatics 21,
1739--1740. The ExPA homepage http://gcrg.ucsd.edu/Downloads/ExtremePathwayAnalysis.