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sybil (version 1.1.2)

oneFluxDel: One Flux Deletion Experiment

Description

Single reaction (flux) deletion analysis.

Usage

oneFluxDel(model, react, ...)

Arguments

model
An object of class modelorg.
react
An object of class reactId or character or integer, fluxes set to zero (upper and lower bound) (default: react_id(model)).
...
Further arguments passed to optimizer.

Value

encoding

utf8

Details

The function oneFluxDel studies the effect of deletion of a single flux on the current objective function (e.g. biomass production). The first step is the calculation of a reference solution, which is the wild type solution. Then n further optimizations are performed (n: number of fluxes) with $v_i = 0$ for $i = 1,\dots,n$.

See Also

modelorg, optsol, optsol_fluxdel, checkOptSol, optimizer and SYBIL_SETTINGS.

Examples

Run this code
data(Ec_core)
  Ec_ofd <- oneFluxDel(Ec_core)

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