deadEndMetabolites

deadEndMetabolites-methods

deadEndMetabolites,modelorg-method

An object of class <code><a href="/link/?package=sybil&version=2.0.0" modelorg'="" data-mini-rdoc="sybil::"></a>'>modelorg</code>.

object

Boolean. If set to <code>TRUE</code>, a list containing metabolite id's will be
 returned, otherwise a list of logical vectors.
 Default: <code>TRUE</code>.

retIds

Search a metabolic network for metabolites, which are produced, but not
 consumed and vice versa.

methods

This Systems Biology Library for R implements algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). Most of the current LP/MILP solvers are supported via additional packages.

Claus Jonathan Fritzemeier

sybil

Efficient Constrained Based Modelling in R

deadEndMetabolites-methods function

<dl class="dl-horizontal">
 <dt><code>signature(object = "modelorg")</code></dt><dd>method to use with class <code><a href="/link/?package=sybil&version=2.0.0" modelorg'="" data-mini-rdoc="sybil::"></a>'>modelorg</code>.</dd>
 </dl>

Methods

An object of class <code><a href='<a href='modelorg'></a>'>modelorg</a></code>.

Identify Dead End Metabolites — deadEndMetabolites-methods

<dl class='dl-horizontal'>
 <dt><code>signature(object = "modelorg")</code></dt><dd>method to use with class <code><a href='<a href='modelorg'></a>'>modelorg</a></code>.</dd>
 </dl>

deadEndMetabolites-methods: Identify Dead End Metabolites

Description

Usage

Arguments

Value

Methods

See Also