sybil (version 2.0.0)

getFluxDist-methods: Retrieve Flux Distribution

Description

Get all primal values of variables after optimization (the resulting flux distribution).

Usage

# S4 method for optObj_clpAPI
getFluxDist(lp)
# S4 method for optObj_cplexAPI
getFluxDist(lp)
# S4 method for optObj_glpkAPI
getFluxDist(lp)
# S4 method for optObj_lpSolveAPI
getFluxDist(lp)
# S4 method for optsol
getFluxDist(lp, react = NULL, opt = NULL, drop = TRUE)

Arguments

lp

An object extending class '>optObj or class '>optsol.

react

Numeric vector or object of class '>reactId indicating the reactions (rows of the flux distribution) to return. Default: NULL.

opt

Numeric vector indicating the optimizations (columns of the flux distribution) to return. Default: NULL.

drop

Used for array subsetting like in [. Default: TRUE.

Value

A numeric matrix or vector containing all primal values (the flux distribution).

Methods

signature(lp = "optObj_clpAPI")

method to use with package optObj_clpAPI.

signature(lp = "optObj_cplexAPI")

method to use with package optObj_cplexAPI.

signature(lp = "optObj_glpkAPI")

method to use with package optObj_glpkAPI.

signature(lp = "optObj_lpSolveAPI")

method to use with package optObj_lpSolveAPI.

signature(lp = "optsol")

method to use with objects of class '>optsol. Returns a subset of the flux distribution stored in slot fluxdist as object of class Matrix. If arguments react and opt are both set to NULL (default), the flux distribution corresponding to the variable indices in slot fldind will be returned.

See Also

Superclass '>optObj and constructor function optObj.