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sybil (version 2.2.0)

summaryOptsol: Summarize Objects of Class Optsol

Description

Generates a quick overview of results of simulations stored in objects of class '>optsol.

Usage

summaryOptsol(opt, mod, perc = 1, tol = SYBIL_SETTINGS("TOLERANCE"))

Arguments

opt

An object of class '>optsol.

mod

An object of class '>modelorg.

perc

A single numeric value in between zero and one indicating how close a flux value has to reach a flux boundary in order to be called “limiting”, see Details below. Default: 1.

tol

A tolerance value, see Details below. Default: SYBIL_SETTINGS("TOLERANCE").

Value

An object of class '>summaryOptsol if a flux distribution exists in argument opt, otherwise a summary of the objective values (mod_obj) is returned.

Details

The function summaryOptsol generates a summary of the simulations resulting in the object given in argument opt. Both model id's, of the '>optsol object and of the '>modelorg object must be identical. The resulting object of class '>summaryOptsol contains information about the number of zeros and non-zeros in the flux distribution, the substrates and products and about the limiting reactions.

A reaction i is called “limiting”, if its flux value vi is non-zero: |vi|>tol and if its flux value hits the flux boundaries: vivi,minpercvivi,maxperc.

See Also

Class '>optsol, class '>modelorg and class '>summaryOptsol.