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sybilSBML (version 2.0.10)

SBML Integration in Package Sybil

Description

SBML (Systems Biology Markup Language) integration in sybil. Many constraint based metabolic models are published in SBML format (*.xml). Herewith is the ability to read and check SBML files in sybil provided.

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Version

Install

install.packages('sybilSBML')

Monthly Downloads

7

Version

2.0.10

License

GPL-3 | file LICENSE

Maintainer

Claus Jonathan Fritzemeier

Last Published

July 20th, 2015

Functions in sybilSBML (2.0.10)

closeSBMLfile

Close SBML File
getSBMLSpeciesList

Get Species List
getSBMLmodId

Get Model Id
getSBMLunitDefinitionsList

Get Unit Definitions List
getSBMLmodel

Get SBML Model
getSBMLversion

Get SBML Version
openSBMLfile

Open SBML File
getSBMLmodName

Get Model Name
versionLibSBML

Get libSBML Version
sbmlPtr-class

Class "sbmlPtr"
getSBMLnumCompart

Get Number of Compartments
getSBMLCompartList

Get Compartment List
getSBMLnumSpecies

Get Number of Species
readSBMLmod

Reads a Metabolic Network in SBML Format
getSBMLlevel

Get SBML Level
getSBMLReactionsList

Get Reaction List
delSBMLmodel

Delete Pointer to SBML Model
sbmlError-class

Class "sbmlError"
validateSBMLdocument

Validate SBML
getSBMLnumReactions

Get Number of Reactions
getSBMLerrors

Get SBML Errors