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sybilSBML (version 2.0.2)

getSBMLCompartList: Get Compartment List

Description

Retrieve list of compartments included in a SBML model

Usage

getSBMLCompartList(sbmlm)

Arguments

sbmlm
An object of class sbmlPtr as returned by getSBMLmodel. This is basically a pointer to a SBML model.

Value

  • If the SBML model contains a ListOfCompartments section, a list is returned:
  • idcharacter vector containing the compartment id's. If no id is given for a particular compartment, the corresponding value is set to "no_id".
  • outsidecharacter vector containing the outside argument of the compartments. If not available, the value is set to the empty string "".
  • All list elements have the same length. If the SBML model does not contain a ListOfCompartments section, NULL is returned.

References

Bornstein, B. J., Keating, S. M., Jouraku, A., and Hucka M. (2008) LibSBML: An API Library for SBML. Bioinformatics 24, 880--881.

See Also

getSBMLmodel, sbmlPtr