getSBMLReactionsList: Get Reaction List
Description
Retrieve list of reactions included in a SBML modelUsage
getSBMLReactionsList(sbmlm)
Arguments
sbmlm
An object of class sbmlPtr as returned by
getSBMLmodel. This is basically a pointer to a SBML model. Value
- If the SBML model contains a ListOfReactions section, a
list is
returned: - idcharacter vector containing the reaction id's. If no id is given for a
particular reaction, the corresponding value is set to
"no_id". - namecharacter vector containing the reaction names. If
not available, the value is set to the empty string
"". - reversiblelogical vector containing the reversible flag of the reactions. If no
reversible flag is given for a particular reaction, the corresponding value
is set to
FALSE. - notescharacter vector containing the note strings. If no note is given for a
particular reaction, the corresponding value is set to the empty string
"". - annotationcharacter vector containing the annotation strings. If no annotation is
given for a particular reaction, the corresponding value is set to the empty
string
"". - reactantsa list containing the reactions reactants.
[object Object],[object Object],[object Object]
If no reactant is given for a particular reaction, the corresponding value
is set to
NULL. - productsa list containing the reactions products.
[object Object],[object Object],[object Object]
If no product is given for a particular reaction, the corresponding value
is set to
NULL. - kinetic_lawa list containing the reactions parameters.
[object Object],[object Object],[object Object]
If no parameter is given for a particular reaction, the corresponding value
is set to
NULL. - All list elements have the same length.
If the SBML model does not contain a ListOfReactions section,
NULL
is returned.
References
Bornstein, B. J., Keating, S. M., Jouraku, A., and Hucka M. (2008)
LibSBML: An API Library for SBML. Bioinformatics 24,
880--881.