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sybilccFBA (version 3.0.1)

getGpr1iso: Choose the the smallest isoenzyme

Description

preprocessing of model to get the minimal cost iso enzyme and eliminate the OR from GPR's.

Usage

getGpr1iso(model, cpx_stoich, MW)

Arguments

model

object of class modelorg representing the metabolic network.

cpx_stoich

giving the stoichiometry of complexes: data frame containing at least two columns 'genes','stoich' 1/10/2015 'gene' : delimited string of genes(ordered by geneid(e.g bnumber)), 'stoich': number of subunits of each gene in the same order in 'genes'

MW

MW measurement for gene using readfaa.r, calc_MW or gene annotation [units g/mmol]

Value

return a LIST:

gpr1iso

data frame containing the choosen term (complex or isoenzyme)

mod_cpx_mw

molecular weight of isoenzyme

rgst

matrix of reaction gene with stoichiometry

See Also

getccFBA_mat