sybilcycleFreeFlux (version 2.0.2)

enumerateCycles: function to enumerate cycles

Description

Uses cycleFreeFlux to enumerate cycles in a given metabolic network.

Usage

enumerateCycles(model, rxnList, solver = SYBIL_SETTINGS("SOLVER"))

Arguments

model

An object of class modelorg.

rxnList

a character vector of reaction ID's to find their flux variability

solver

Single character value. The solver to use. See SYBIL_SETTINGS for possible values. Default: SYBIL_SETTINGS("SOLVER").

Value

return a list of unique loops found in the model.

See Also

modelorg cfFBA

Examples

# NOT RUN {
##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
# }
# NOT RUN {
data(Ec_core)
model=Ec_core

cycles=enumerateCycles(model,react_id(model))
# }
# NOT RUN {
## The function is currently defined as
"enumerateCycles"
# }