evaluate

Function for evaluating F1 by cell type,
adapted from automated cell type identifiaction benchmarking paper (Abdelaal et al. Genome Biology, 2019)

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.

Joyce Kang

symphony

Efficient and Precise Single-Cell Reference Atlas Mapping

Ilya Korsunsky

Soumya Raychaudhuri

evaluate function

<dl><dt>true</dt>
<dd>vector of true labels</dd>
<dt>predicted</dt>
<dd>vector of predicted labels</dd></dl>

Arguments

Function for evaluating F1 by cell type,
adapted from automated cell type identifiaction benchmarking paper (Abdelaal et al. Genome Biology, 2019) — evaluate

<dl>

<dt>true</dt>
<dd>vector of true labels</dd>


<dt>predicted</dt>
<dd>vector of predicted labels</dd>

</dl>

evaluate: Function for evaluating F1 by cell type, adapted from automated cell type identifiaction benchmarking paper (Abdelaal et al. Genome Biology, 2019)

Description

Usage

Value

Arguments