pbmcs_meta_small

Metadata for 10x PBMCs dataset for vignette.

datasets

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.

Joyce Kang

symphony

Efficient and Precise Single-Cell Reference Atlas Mapping

Ilya Korsunsky

Soumya Raychaudhuri

pbmcs_meta_small function

: A data frame with 1,200 cells and 7 metadata fields.<dl>
<dt>cell_id</dt>
<dd>unique cell ID</dd><dt>donor</dt>
<dd>dataset (3pv1, 3pv2, or 5p)</dd><dt>nUMI</dt>
<dd>number of UMIs</dd><dt>nGene</dt>
<dd>number of genes</dd><dt>percent_mito</dt>
<dd>percent mito genes</dd><dt>cell_type</dt>
<dd>cell type assigned in Symphony publication</dd><dt>cell_type_broad</dt>
<dd>cell subtype assigned in Symphony publication</dd></dl>

Format

Metadata for 10x PBMCs dataset for vignette. — pbmcs_meta_small

: A data frame with 1,200 cells and 7 metadata fields.<dl>
<dt>cell_id</dt>
<dd>unique cell ID</dd>

<dt>donor</dt>
<dd>dataset (3pv1, 3pv2, or 5p)</dd>

<dt>nUMI</dt>
<dd>number of UMIs</dd>

<dt>nGene</dt>
<dd>number of genes</dd>

<dt>percent_mito</dt>
<dd>percent mito genes</dd>

<dt>cell_type</dt>
<dd>cell type assigned in Symphony publication</dd>

<dt>cell_type_broad</dt>
<dd>cell subtype assigned in Symphony publication</dd>



</dl>

pbmcs_meta_small: Metadata for 10x PBMCs dataset for vignette.

Description

Usage

Arguments

Format