scaleDataWithStats

Scale data with given mean and standard deviations

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.

Joyce Kang

symphony

Efficient and Precise Single-Cell Reference Atlas Mapping

Ilya Korsunsky

Soumya Raychaudhuri

scaleDataWithStats function

<dl><dt>A</dt>
<dd>expression matrix (genes by cells)</dd>
<dt>mean_vec</dt>
<dd>vector of mean values</dd>
<dt>sd_vec</dt>
<dd>vector of standard deviation values</dd>
<dt>margin</dt>
<dd>1 for row-wise calculation</dd>
<dt>thresh</dt>
<dd>threshold to clip max values</dd></dl>

Arguments

Scale data with given mean and standard deviations — scaleDataWithStats

<dl>

<dt>A</dt>
<dd>expression matrix (genes by cells)</dd>


<dt>mean_vec</dt>
<dd>vector of mean values</dd>


<dt>sd_vec</dt>
<dd>vector of standard deviation values</dd>


<dt>margin</dt>
<dd>1 for row-wise calculation</dd>


<dt>thresh</dt>
<dd>threshold to clip max values</dd>

</dl>

scaleDataWithStats: Scale data with given mean and standard deviations

Description

Usage

Value

Arguments