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synapter (version 1.14.2)

Label-free data analysis pipeline for optimal identification and quantitation

Description

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

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Version

Version

1.14.2

License

GPL-2

Maintainer

Laurent Gatto

Last Published

February 15th, 2017

Functions in synapter (1.14.2)

MasterFdrResults-class

Class "MasterFdrResults"
Deprecated

synapter Deprecated and Defunct
estimateMasterFdr

Computes FDR for all possible final peptide combinations
synapterGuide

Opens the 'synapter' vignette
MasterPeptides-class

Class "MasterPeptides"
synapterTinyData

Loads a small test data for the 'synapter' package
synapter-package

Combine label-free data for optimal identification and quantitation
synergise

Synergise identification and quantitation results
inspectPeptideScores

Inspect peptide scores.
makeMaster

Merges final peptide files
Synapter

Class "Synapter"