Usage
# S3 method for GenMap
plot(x, dense = FALSE, nMarker = TRUE, bw=1,
centr=NULL, file=NULL, fileFormat="pdf",...)plotGenMap(map, dense = FALSE, nMarker = TRUE, bw=1,
centr=NULL, file=NULL, fileFormat="pdf",...)
Arguments
x
object of class GenMap
, i. e. the map
object in a gpData
-object
map
object of class gpData
with object map
or a data.frame
with columns 'chr' (specifying the chromosome of the marker) and 'pos' (position of the marker within chromosome measured with genetic or physical distances)
dense
logical
. Should density visualization for high-density genetic maps be used?
nMarker
logical
. Print number of markers for each chromosome?
bw
numeric
. Bandwidth to use for dense=TRUE
to control the resolution (default = 1 [map unit]).
centr
numeric
vector. Positions for the centromeres in the same order as chromosomes in map
. If "maize"
, centromere positions of maize in Mbp are used (according to maizeGDB, version 2).
file
Optionally a path to a file where the plot is saved to
fileFormat
character
. At the moment two file formats are supported: pdf and png. Default is "pdf"
.
…
further graphical arguments for function plot