write.plink

<code>gpData</code> object with elements <code>geno</code> and <code>map</code>

<code>character</code>. Directory for PLINK input files

wdir

<code>character</code>. Prefix for PLINK input files.

prefix

<code>numeric</code>. Threshold for the LD used in PLINK.

ld.threshold

<code>character</code>. Specifies the type of return value for PLINK.

type

Create input files and corresponding script for PLINK (Purcell et al. 2007) to estimate pairwise LD through function <code>pairwiseLD</code>.

manip

The package was developed within the Synbreed project for
        synergistic plant and animal breeding (www.synbreed.tum.de). It
        contains a collection of functions required for genomic
        prediction in both plant and animal breeding. This covers data
        processing, data visualization and analysis. All functions are
        embedded within the framework of a single, unified data object.
        The implementation is flexible with respect to a wide range of
        data formats. This research was funded by the German Federal
        Ministry of Education and Research (BMBF) within the
        AgroClustEr Synbreed - Synergistic plant and animal breeding
        (FKZ 0315528A).

write.plink: Prepare data for PLINK

Description

Usage

Arguments

Value

References

See Also

Examples