LDMap

Object of class <code>LDmat</code> generated by function <code>pairwiseLD</code> and argument <code>type="matrix"</code>

LDmat

Object of class <code>gpData</code> that was used in <code>pairwiseLD</code>

gpData

<code>numeric</code>. Return value is a plot for each chromosome in <code>chr</code>.

Optionally a path to a file where plot is saved as <code>pdf</code>

file

Further arguments that could be passed to function <code>LDheatmap</code>

Visualization of pairwise Linkage Disequilibrium (LD) estimates generated by function <code>pairwiseLD</code> in a LD heatmap for each chromosome using the <code>LDheatmap</code> package (Shin et al, 2006) .

hplot

The package was developed within the Synbreed project for
        synergistic plant and animal breeding (www.synbreed.tum.de). It
        contains a collection of functions required for genomic
        prediction in both plant and animal breeding. This covers data
        processing, data visualization and analysis. All functions are
        embedded within the framework of a single, unified data object.
        The implementation is flexible with respect to a wide range of
        data formats. This research was funded by the German Federal
        Ministry of Education and Research (BMBF) within the
        AgroClustEr Synbreed - Synergistic plant and animal breeding
        (FKZ 0315528A).

LDMap: LD Heatmap

Description

Usage

Arguments

References

See Also

Examples