Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
Maintainer: Marta Farre m.farre-belmonte@kent.ac.uk [copyright holder]
Authors:
Sarah Quigley slq4@kent.ac.uk
Joana Damas joanadamas@gmail.com
Denis Larkin dlarkin@rvc.ac.uk
Useful links:
Report bugs at https://github.com/Farre-lab/syntenyPlotteR/issues