sysargs

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SYSargs accessor methods

Methods to access information from SYSargs object.

Keywords
utilities
Usage
sysargs(x)
Arguments
x
object of class SYSargs
Value

  • various outputs

Aliases
  • targetsin
  • targetsin-methods
  • targetsout
  • targetsout-methods
  • targetsheader
  • targetsheader-methods
  • modules
  • modules-methods
  • software
  • software-methods
  • cores
  • cores-methods
  • other
  • other-methods
  • reference
  • reference-methods
  • results
  • results-methods
  • infile1
  • infile1-methods
  • infile2
  • infile2-methods
  • outfile1
  • outfile1-methods
  • SampleName
  • SampleName-methods
  • sysargs
  • sysargs-methods
  • outpaths
  • outpaths-methods
Examples
## Construct SYSargs object from param and targets files 
param <- system.file("extdata", "tophat.param", package="systemPipeR")
targets <- system.file("extdata", "targets.txt", package="systemPipeR")
args <- systemArgs(sysma=param, mytargets=targets)
args
names(args); modules(args); cores(args); outpaths(args); sysargs(args)
Documentation reproduced from package systemPipeR, version 1.6.2, License: Artistic-2.0

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