tabula (version 1.7.0)

plot_line: Line Plot

Description

Plots a rank vs relative abundance diagram.

Usage

plot_rank(object, ...)
# S4 method for matrix
plot_rank(object, log = NULL, facet = FALSE)
# S4 method for data.frame
plot_rank(object, log = NULL, facet = FALSE)

Value

A ggplot2::ggplot object.

Arguments

object

A \(m \times p\) numeric matrix or data.frame of count data (absolute frequencies giving the number of individuals for each class).

...

Further arguments to be passed to internal methods.

log

A character string which contains "x" if the x axis is to be logarithmic, "y" if the y axis is to be logarithmic and "xy" or "yx" if both axes are to be logarithmic (base 10).

facet

A logical scalar: should a matrix of panels defined by case/sample be drawn?

Author

N. Frerebeau

References

Magurran, A. E. (1988). Ecological Diversity and its Measurement. Princeton, NJ: Princeton University Press. tools:::Rd_expr_doi("10.1007/978-94-015-7358-0").

See Also

Other plot methods: plot_bar, plot_diversity, plot_heatmap(), plot_spot()

Examples

## Abundance matrix
## Coerce datasets to a count matrix (data from Desachy 2004)
data("compiegne", package = "folio")

## Plot rank vs abundance
plot_rank(compiegne)
plot_rank(compiegne, facet = TRUE)