summarize_nejm_vert

Given a row and column object from the parser apply a Kruskal test and output
the results vertically (#Categories+1) X (N, Summary, Statistic)

Provides an extensible formula system to quickly and easily create
production quality tables. The processing steps are a formula parser,
statistical content generation from data as defined by formula, followed by
rendering into a table. Each step of the processing is separate and user
definable thus creating a set of composable building blocks for
highly customizable table generation. A user is not limited by any of the
choices of the package creator other than the formula grammar. For example,
one could chose to add a different S3 rendering function and output a format
not provided in the default package, or possibly one would rather have Gini
coefficients for their statistical content in a resulting table. Routines to
achieve New England Journal of Medicine style, Lancet style and
Hmisc::summaryM() statistics are provided. The package contains rendering
for HTML5, Rmarkdown and an indexing format for use in tracing and tracking
are provided.

Shawn Garbett

tangram

The Grammar of Tables

Thomas Stewart

Jennifer Thompson

Frank Harrell

Ahra Kim

summarize_nejm_vert function

<dl><dt>table</dt>
<dd>The table object to modify</dd>
<dt>row</dt>
<dd>The row variable object to use (categorical)</dd>
<dt>column</dt>
<dd>The column variable to use (numerical)</dd>
<dt>cell_style</dt>
<dd>list; cell styling functions</dd>
<dt>collapse_single</dt>
<dd>logical; default TRUE. Categorical variables with a two values collapse to single row.</dd>
<dt>pformat</dt>
<dd>numeric, character or function; A formatting directive to be applied to p-values</dd>
<dt>msd</dt>
<dd>logical; include msd in summary</dd>
<dt>test</dt>
<dd>logical; include statistical test results</dd>
<dt>quant</dt>
<dd>numeric; vector of quantiles to include. Should be an odd number since the middle value is highlighted on display.</dd>
<dt>...</dt>
<dd>absorbs additional arugments. Unused at present.</dd></dl>

Arguments

Create a summarization for a categorical row versus X numerical column — summarize_nejm_vert

<dl>

<dt>table</dt>
<dd>The table object to modify</dd>


<dt>row</dt>
<dd>The row variable object to use (categorical)</dd>


<dt>column</dt>
<dd>The column variable to use (numerical)</dd>


<dt>cell_style</dt>
<dd>list; cell styling functions</dd>


<dt>collapse_single</dt>
<dd>logical; default TRUE. Categorical variables with a two values collapse to single row.</dd>


<dt>pformat</dt>
<dd>numeric, character or function; A formatting directive to be applied to p-values</dd>


<dt>msd</dt>
<dd>logical; include msd in summary</dd>


<dt>test</dt>
<dd>logical; include statistical test results</dd>


<dt>quant</dt>
<dd>numeric; vector of quantiles to include. Should be an odd number since the middle value is highlighted on display.</dd>


<dt>...</dt>
<dd>absorbs additional arugments. Unused at present.</dd>

</dl>

summarize_nejm_vert: Create a summarization for a categorical row versus X numerical column

Description

Usage

Value

Arguments