taxon_database

0th

Percentile

Taxonomy database class

Used to store information about taxonomy databases. This is typically used to store where taxon information came from in taxon() objects.

Usage
taxon_database(name = NULL, url = NULL, description = NULL,
  id_regex = NULL)
Arguments
name

(character) name of the database

url

(character) url for the database

description

(character) description of the database

id_regex

(character) id regex

Value

An R6Class object of class TaxonDatabase

See Also

database_list

Other classes: hierarchies, hierarchy, taxa, taxmap, taxon_id, taxon_name, taxon_rank, taxonomy, taxon

Aliases
  • taxon_database
Examples
# NOT RUN {
# create a database entry
(x <- taxon_database(
  "ncbi",
  "http://www.ncbi.nlm.nih.gov/taxonomy",
  "NCBI Taxonomy Database",
  "*"
))
x$name
x$url

# use pre-created database objects
database_list
database_list$ncbi
# }
Documentation reproduced from package taxa, version 0.1.0, License: MIT + file LICENSE

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