ex_hierarchy2

An example Hierarchy object built from the ground up.

data

Provides taxonomic classes for
groupings of taxonomic names without data, and those
with data. Methods provided are "taxonomically aware", in
that they know about ordering of ranks, and methods that
filter based on taxonomy also filter associated data.
This package is described in the publication: "Taxa: An R
package implementing data standards and methods for
taxonomic data", Zachary S.L. Foster, Scott Chamberlain,
Niklaus J. Gr<c3><bc>nwald (2018) <doi:10.12688/f1000research.14013.2>.

Zachary Foster

taxa

Taxonomic Classes

Scott Chamberlain

ex_hierarchy2 function

A <code><a rd-options="=hierarchy" href="/link/hierarchy()?package=taxa&version=0.3.3&to=%3Dhierarchy" data-mini-rdoc="=hierarchy::hierarchy()">hierarchy()</a></code> object with<ul>
<li>name: Felidae / rank: family / id: 9681</li>
<li>name: Puma / rank: genus / id: 146712</li>
<li>name: Puma concolor / rank: species / id: 9696</li>
</ul>Based on NCBI taxonomic classification

Format

An example Hierarchy object — ex_hierarchy2

A <code><a rd-options='=hierarchy' href='hierarchy()'>hierarchy()</a></code> object with<ul>
<li>name: Felidae / rank: family / id: 9681</li>
<li>name: Puma / rank: genus / id: 146712</li>
<li>name: Puma concolor / rank: species / id: 9696</li>
</ul>Based on NCBI taxonomic classification

ex_hierarchy2: An example Hierarchy object

Description

Arguments

Format

See Also