print_tree

A <code>taxonomy</code> or <code>taxmap</code> object

What data to return. Default is taxon names. Any result of
<code><a rd-options="=all_names" href="/link/all_names()?package=taxa&version=0.3.4&to=%3Dall_names" data-mini-rdoc="=all_names::all_names()">all_names()</a></code> can be used, but it usually only makes sense to use data with
one value per taxon, like taxon names.

value

Print a text-based tree of a <code><a rd-options="=taxonomy" href="/link/taxonomy()?package=taxa&version=0.3.4&to=%3Dtaxonomy" data-mini-rdoc="=taxonomy::taxonomy()">taxonomy()</a></code> or <code><a rd-options="=taxmap" href="/link/taxmap()?package=taxa&version=0.3.4&to=%3Dtaxmap" data-mini-rdoc="=taxmap::taxmap()">taxmap()</a></code> object.

Provides taxonomic classes for
groupings of taxonomic names without data, and those
with data. Methods provided are "taxonomically aware", in
that they know about ordering of ranks, and methods that
filter based on taxonomy also filter associated data.
This package is described in the publication: "Taxa: An R
package implementing data standards and methods for
taxonomic data", Zachary S.L. Foster, Scott Chamberlain,
Niklaus J. Gr<c3><bc>nwald (2018) <doi:10.12688/f1000research.14013.2>.

Zachary Foster

taxa

Taxonomic Classes

Scott Chamberlain

print_tree function

What data to return. Default is taxon names. Any result of
<code><a rd-options='=all_names' href='all_names()'>all_names()</a></code> can be used, but it usually only makes sense to use data with
one value per taxon, like taxon names.

Print a text-based tree of a <code><a rd-options='=taxonomy' href='taxonomy()'>taxonomy()</a></code> or <code><a rd-options='=taxmap' href='taxmap()'>taxmap()</a></code> object.

print_tree: Print a text tree

Description

Arguments

Examples