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taxa (version 0.4.3)

tax_id.taxa_classification: Set and get taxon IDs

Description

Set and get the taxon IDs in objects that have them, such as taxon objects.

Usage

# S3 method for taxa_classification
tax_id(x)

# S3 method for taxa_classification tax_id(x) <- value

tax_id(x)

tax_id(x) <- value

# S3 method for taxa_taxon tax_id(x)

# S3 method for taxa_taxon tax_id(x) <- value

# S3 method for taxa_taxonomy tax_id(x)

# S3 method for taxa_taxonomy tax_id(x) <- value

Arguments

x

An object with taxon IDs.

value

The taxon IDs to set. Inputs will be coerced into a taxon_id vector.

Examples

Run this code
x <- taxon(name = c('Homo sapiens', 'Bacillus', 'Ascomycota', 'Ericaceae'),
           rank = c('species', 'genus', 'phylum', 'family'),
           id = taxon_id(c('9606', '1386', '4890', '4345'), db = 'ncbi'),
           auth = c('Linnaeus, 1758', 'Cohn 1872', NA, 'Juss., 1789'))

tax_id(x)
tax_id(x) <- paste0('00', tax_id(x))
tax_id(x)[1] <- '00000'

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