Lookup-table for IDs of taxonomic ranks
Given the identifier for a data object, return all metadata about the object.
Get hierarchy down from tsn
Lookup in the APGII taxonomy and replace family names.
Retrieve the taxonomic hierarchy from given EOL taxonID.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Search Catalogue of Life for for direct children of a particular taxon.
Retrieve the taxonomic hierarchy for a given taxon ID.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Lookup-table for APGIII order names
Get any match count.
Returns the parent TSN for the entered TSN.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get core metadata from tsn
Search Catalogue of Life for taxonomic IDs
Get full hierarchy from tsn
Resolve names using Global Names Resolver.
Get the NameID codes from Tropicos for taxonomic names.
Get scientific names from common names.
Search for tsn by common name
Get full record from TSN.
Retrieve taxonomic identifiers for a given taxon name.
Search Catalogue of Life for taxonomic classifications.
Get accepted names from tsn
Get rank for a given taxonomic name.
Get the TSN code for a search term.
Retrieve gene sequences from NCBI by taxon name and gene names.
Returns a list of the pulications used for the TSN.
Returns the review year for the TSN.
getjurisdictionoriginvalues
Get jurisdiction origin values
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Search for taxonomy data from Plantminer.com
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
Get currency from tsn
getitistermsfromcommonname
Get itis terms from common names
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Get comment detail from TSN
Search for gene sequences available for a species from NCBI.
Function to parse xml data, decode strings, and return NULL if logical is zero.
Function to parse xml data and decode strings
Get the Catalogue of Life ID from taxonomic names.
Get date data from tsn
Retrieve gene sequences from NCBI by accession number.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Get jurisdiction data, i.e., native or not native in a region.
Get common names from tsn
Gets the unique LSID for the TSN, or an empty result if there is no match.
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
gettsnbyvernacularlanguage
Retrieve accepted TSN (with accepted name)
Search for pages in EOL database using a taxonconceptID.
Get possible jurisdiction values
Get itis terms from common names
Get kingdom names from tsn
Parse taxon names using the GBIF name parser.
Retrieve gene sequences from NCBI by accession number.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
Search for terms in EOL database.
Provides the date the ITIS database was last updated.
Get the UID codes from NCBI for taxonomic names.
This function will return NameBankIDs that match given search terms
Get coverge from tsn
Aggregate species data to given taxonomic rank
getcredibilityratingfromtsn
Get credibility rating from tsn
searchbycommonnameendswith
Search for tsn by common name ending with
Return all accepted names for a taxon name with a given id.
Get possible credibility ratings
Get a summary from the IUCN Red List.
Get data sources for the Global Names Resolver.
Search for taxonomic name details using the Global Names Index.
Function to get API key.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Get all possible kingdom names
Returns the usage information for the TSN.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
Return all distribution records for for a taxon name with a given id.
Search for taxonomic names using the Global Names Index.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Ping the ITIS API to see if it's working.
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Returns a list of the other sources used for the TSN.
Get hierarchy up from tsn
Replacement function for ldply that should be faster in all cases.
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Return all reference records for for a taxon name with a given id.
Retrieve gene sequences from NCBI by accession number.
Get any matching IUCN species names
Get full ITIS record for one or more ITIS TSN's or lsid's.
Get common names from scientific names.
Deprecated functions in taxize
Vector of 793 genus names of plants
Resolve names using Global Names Recognition and Discovery.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Return summary data a taxon name with a given id.
Retrieve taxonomic rank name from given TSN.
Get The Plant List csv files.
Aggregate data by given taxonomic rank
Return all distribution records for for a taxon name with a given id.
Get kingdom names.
Search uBio by namebank ID.
Taxnomic search and phylogeny retrieval.
Search Tropicos by scientific name, common name, or Tropicos ID.
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Search uBio by namebank ID.
Extractor functions for iucn
-class.
Search for any match
Get taxonomic names for a given rank.
Return all synonyms for a taxon name with a given id.
Get The Plant List families.
getitistermsfromscientificname
Get itis terms from scientific names
Get all possible geographic values
Return all synonyms for a taxon name with a given id.
Vector of 1,182 species names of plants
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
Provides a list of the unique languages used in the vernacular table.
Check invasive species status for a set of species from GISD database
Get kingdom names.
Retrieve accepted TSN (with accepted name).
Query Phylomatic for a phylogenetic tree.
Retrieve gene sequences from NCBI by accession number.
Get references related to a ITIS TSN.
ubio_classification_search
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Capitalize the first letter of a character string.
Return all accepted names for a taxon name with a given id.
Get description of the ITIS service
Search for any matched page
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Search the CANADENSYS Vascan API.
Search for presence of taxonomic names in EOL invasive species databases.
Get taxonomic names for a given taxonomic name query.
Returns a list of the synonyms (if any) for the TSN.
Search by scientific name
Parse scientific names using EOL's name parser.
Lookup-table for APGIII family names
Ping EOL API to see if it's working.
Get expert information for the TSN.
Get a random vector of species names.
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith
and searchbycommonnameendswith
Search the Phylotastic Taxonomic Name Resolution Service.
Return all reference records for for a taxon name with a given id.