Lookup-table for APGIII family names
Retrieve the taxonomic hierarchy for a given taxon ID.
Search Catalogue of Life for taxonomic classifications.
Get possible jurisdiction values
Get the NameID codes from Tropicos for taxonomic names.
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get the TSN code for a search term.
Search Catalogue of Life for for direct children of a particular taxon.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Fields available in gbif_suggest function
Search Catalogue of Life for taxonomic IDs
Retrieve the taxonomic hierarchy from given EOL taxonID.
Convert list of classifications to a tree.
Search for terms in EOL database.
Get date data from tsn
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Get currency from tsn
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
Function to parse xml data, decode strings, and return NULL if logical is zero.
Function to get API key.
Search for presence of taxonomic names in EOL invasive species databases.
getcredibilityratingfromtsn
Get credibility rating from tsn
Get hierarchy up from tsn
Get the UID codes from NCBI for taxonomic names.
Get the GBIF backbone taxon ID from taxonomic names.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Get any matching IUCN species names
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Retrieve the downstream taxa for a given taxon name or ID.
Get scientific names from common names.
Get coverge from tsn
Ping the ITIS API to see if it's working.
Aggregate data by given taxonomic rank
Retrieve accepted TSN (with accepted name).
Lookup-table for APGIII order names
Function to parse xml data and decode strings
Resolve names using Global Names Resolver.
Get kingdom names from tsn
getjurisdictionoriginvalues
Get jurisdiction origin values
Parse taxon names using the GBIF name parser.
Returns the review year for the TSN.
Retrieve gene sequences from NCBI by taxon name and gene names.
Get full ITIS record for one or more ITIS TSN's or lsid's.
Return all synonyms for a taxon name with a given id.
Resolve names using Global Names Recognition and Discovery.
Get core metadata from tsn
Parse scientific names using EOL's name parser.
Table of APGIII generic names
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Lookup in the APGII taxonomy and replace family names.
Search for gene sequences available for a species from NCBI.
Search for taxonomic name details using the Global Names Index.
Returns a list of the other sources used for the TSN.
Provides the date the ITIS database was last updated.
Get common names from scientific names.
Get references related to a ITIS TSN.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get comment detail from TSN
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Get expert information for the TSN.
Get a summary from the IUCN Red List.
Get full record from TSN.
Get the Catalogue of Life ID from taxonomic names.
Get taxonomic names for a given rank.
Get common names from tsn
Provides a list of the unique languages used in the vernacular table.
Return all accepted names for a taxon name with a given id.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Get full hierarchy from tsn
Return all accepted names for a taxon name with a given id.
Return summary data a taxon name with a given id.
Get taxonomic names for a given taxonomic name query.
Search for pages in EOL database using a taxonconceptID.
Return all synonyms for a taxon name with a given id.
Given the identifier for a data object, return all metadata about the object.
Get itis terms from common names
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
This function will return NameBankIDs that match given search terms
Get data sources for the Global Names Resolver.
Replacement function for ldply that should be faster in all cases.
Retrieve gene sequences from NCBI by accession number.
Search for taxonomic names using the Global Names Index.
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Extractor functions for iucn-class.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
Retrieve taxonomic identifiers for a given taxon name.
Search the Phylotastic Taxonomic Name Resolution Service.
Returns a list of the pulications used for the TSN.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
getitistermsfromscientificname
Get itis terms from scientific names
Returns a list of the synonyms (if any) for the TSN.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Get any match count.
Get kingdom names.
Returns the parent TSN for the entered TSN.
Returns the usage information for the TSN.
Get all possible geographic values
Get rank for a given taxonomic name.
Check invasive species status for a set of species from GISD database
Search for any matched page
Gets the unique LSID for the TSN, or an empty result if there is no match.
Lookup-table for family, genus, and species names for ThePlantList
Return all reference records for for a taxon name with a given id.
Search uBio by namebank ID.
Retrieve gene sequences from NCBI by accession number.
ubio_classification_search
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Vector of 793 genus names of plants
Get a random vector of species names.
Return all distribution records for for a taxon name with a given id.
Return all reference records for for a taxon name with a given id.
Search by scientific name
Search uBio by namebank ID.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Get hierarchy down from tsn
Retrieve gene sequences from NCBI by accession number.
gettsnbyvernacularlanguage
Retrieve accepted TSN (with accepted name)
Lookup-table for IDs of taxonomic ranks
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith and searchbycommonnameendswith
Taxnomic search and phylogeny retrieval.
Search for tsn by common name
Get jurisdiction data, i.e., native or not native in a region.
Get kingdom names.
Vector of 1,182 species names of plants
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Get The Plant List families.
Search Tropicos by scientific name, common name, or Tropicos ID.
Aggregate species data to given taxonomic rank
Search for any match
Get The Plant List csv files.
Search the CANADENSYS Vascan API.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Get description of the ITIS service
Get all possible kingdom names
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Return all distribution records for for a taxon name with a given id.
Retrieve taxonomic rank name from given TSN.
Ping EOL API to see if it's working.
Retrieve gene sequences from NCBI by accession number.
Get accepted names from tsn
getitistermsfromcommonname
Get itis terms from common names
Get possible credibility ratings
Query Phylomatic for a phylogenetic tree.
Search for taxonomy data from Plantminer.com
searchbycommonnameendswith
Search for tsn by common name ending with
Capitalize the first letter of a character string.
Deprecated functions in taxize